Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq8587 84.2 2e-11
seq8832 82.4 5e-11
>seq8587
Length=192155
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
|| ||| | |||| ||||| || || |||||||| |||||||| ||| ||| |
Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 141836
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| |||| ||||| || | ||| || || | ||||| || || |||||||||
Sbjct 141837 TTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCAGA 141896
Query 15157 GTTTTTACAAAAATTTGCATA 15177
||||| || ||||| ||||||
Sbjct 141897 GTTTTGACGAAAATCTGCATA 141917
>seq8832
Length=33236
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | ||||| ||||| ||||| ||||||||||||||| || |||||||
Sbjct 23287 CCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCC 23346
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| |||| || |||||| ||| || || | || || || || || || |||
Sbjct 23347 TTTACATTTTCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGA 23406
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || || ||||||||
Sbjct 23407 GTCTTGACGAAGATTTGCAT 23426
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357335745940775
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |