Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq8587 84.2 2e-11 seq8832 82.4 5e-11 >seq8587 Length=192155 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 || ||| | |||| ||||| || || |||||||| |||||||| ||| ||| | Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 141836 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 || ||| |||| ||||| || | ||| || || | ||||| || || ||||||||| Sbjct 141837 TTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCAGA 141896 Query 15157 GTTTTTACAAAAATTTGCATA 15177 ||||| || ||||| |||||| Sbjct 141897 GTTTTGACGAAAATCTGCATA 141917 >seq8832 Length=33236 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096 ||||| | ||||| ||||| ||||| ||||||||||||||| || ||||||| Sbjct 23287 CCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCC 23346 Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156 |||||| |||| || |||||| ||| || || | || || || || || || ||| Sbjct 23347 TTTACATTTTCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGA 23406 Query 15157 GTTTTTACAAAAATTTGCAT 15176 || || || || |||||||| Sbjct 23407 GTCTTGACGAAGATTTGCAT 23426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357335745940775