Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq8832 95.1 1e-14 seq8587 87.8 2e-12 >seq8832 Length=33236 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||| ||||||| ||||||||||||||||| ||||| || |||||| ||| || | Sbjct 22689 CCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 22748 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | ||| | ||| || | | ||| ||||||| ||| | || ||||| || || Sbjct 22749 TTCACATTTTCAATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 22808 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || || || |||||||| Sbjct 22809 GTCTTGACGAAGATCTGCAT 22828 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| |||||||||||||||| || || || || ||||| |||||| || || | Sbjct 23583 CCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTGGCC 23642 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | |||| ||| || | | ||| ||||||| ||| | || ||||| || || Sbjct 23643 TTGACGTTCTCGATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 23702 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || || || |||||||| Sbjct 23703 GTCTTAACGAAGATCTGCAT 23722 >seq8587 Length=192155 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 126971 TTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTC 127030 || |||||| ||||||| ||||||||||| ||||| ||||| || |||||| ||| || Sbjct 139989 TTACCAGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATCTTG 140048 Query 127031 TGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTC 127090 ||| | | ||| | |||||| | | ||| ||||||| || | || || || || Sbjct 140049 GCCTTCACATTTTCAATGGTGTCGGAAGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTA 140108 Query 127091 AGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| || ||||| Sbjct 140109 AGGGTCTTGACAAAGATTTGCAT 140131 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| |||||||||||||||| || || || || |||||||||||| ||||| | Sbjct 140882 CCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAGCC 140941 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 |||| | || | ||| |||| | |||||||| | ||| | || || || || || Sbjct 140942 TTGACGTTCTCAATGGTATCCGAAGCTTCGACTTCAAGGGTAATTGTCTTTCCAGTAAGG 141001 Query 127094 GTTTTTACAAAAATCTGCAT 127113 || || || || |||||||| Sbjct 141002 GTCTTGACGAAGATCTGCAT 141021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475424036339600