Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq8587 95.1 1e-14 seq8832 93.3 4e-14 seq8275 93.3 4e-14 >seq8587 Length=192155 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 |||||| | |||||||||||||| || || ||||| ||||||||||| || || || Sbjct 140289 CCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 140348 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| ||| | |||||| |||| ||||||||||| |||| || || || || || Sbjct 140349 TTGACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGAGG 140408 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || || || || ||||| Sbjct 140409 GTCTTCACGAATATCTGCAT 140428 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||||||| |||||||| || ||||| ||||| |||||||||||||| || | | Sbjct 140596 ATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCCTTTACATTT 140655 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||| ||||| | ||| ||||||||||| | || || || || || || || || Sbjct 140656 TCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAAGGGTCTTGACG 140715 Query 45330 AAAATTTGCAT 45340 || |||||||| Sbjct 140716 AAGATTTGCAT 140726 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | ||||| || ||||| || || |||||||||||||| || || || || Sbjct 139989 TTACCAGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATCTTG 140048 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 || | ||| | ||||||||||| ||| ||||||||||| | || || || || Sbjct 140049 GCCTTCACATTTTCAATGGTGTCGGAAGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTA 140108 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||| Sbjct 140109 AGGGTCTTGACAAAGATTTGCAT 140131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||| ||| ||||||||||| ||||| ||||| || |||||||| || ||| | || | Sbjct 139702 ATCAGTCGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCTTTCA-CGTT 139760 Query 45270 -TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 || | ||| || |||| ||| |||||||| || | || ||||| || || || || || Sbjct 139761 CTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 139820 Query 45329 AAAAATTTGCATC 45341 || || |||||| Sbjct 139821 GAAGATCTGCATC 139833 >seq8832 Length=33236 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 |||||||| |||||||| || ||||| ||||| ||||| |||||||| || | | Sbjct 23296 ATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCCTTTACATTT 23355 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 || | ||| ||||| | || ||||||||||| | ||| || || || ||||| || || Sbjct 23356 TCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGAGTCTTGACG 23415 Query 45330 AAAATTTGCAT 45340 || |||||||| Sbjct 23416 AAGATTTGCAT 23426 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | |||||||||||||| || || ||||| ||||||||||| || || || Sbjct 22986 CCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 23045 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| ||| | |||||| |||| |||||||| || || | || || || || || Sbjct 23046 TTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGAGG 23105 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || ||||| || ||||| Sbjct 23106 GTCTTGACAAAGATCTGCAT 23125 >seq8275 Length=204344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 45215 TCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTAC 45274 ||||||||| ||||| ||||| ||||| ||||||||||| ||| ||| | ||| | Sbjct 59409 TCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGCTTTCACATTTTCAAT 59350 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 |||||||| | || || ||||| || | || || |||||||| ||||| ||||| || Sbjct 59349 AGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGGGTTTTCACAAAGAT 59290 Query 45335 TTGCAT 45340 ||||| Sbjct 59289 CTGCAT 59284 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||| | ||| |||||||| || ||||||||||| ||||||||||| || || | Sbjct 59710 ATATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTGGCCTTCACAT 59651 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 || | ||||| || | ||||||||| || || | ||| || || || | || |||| Sbjct 59650 TCTCAATTGTGTCCGAGGCCTCGACTTCCAGGGTGATCGTCTTTCCAGTCAATGTCTTTA 59591 Query 45328 CAAAAATTTGCAT 45340 |||| |||||||| Sbjct 59590 CAAAGATTTGCAT 59578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451930229733400