Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq8587 95.1 1e-14
seq8832 93.3 4e-14
seq8275 93.3 4e-14
>seq8587
Length=192155
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260
|||||| | |||||||||||||| || || ||||| ||||||||||| || || ||
Sbjct 140289 CCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 140348
Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320
|||| ||| | |||||| |||| ||||||||||| |||| || || || || ||
Sbjct 140349 TTGACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGAGG 140408
Query 45321 GTTTTTACAAAAATTTGCAT 45340
|| || || || || |||||
Sbjct 140409 GTCTTCACGAATATCTGCAT 140428
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||||||| |||||||| || ||||| ||||| |||||||||||||| || | |
Sbjct 140596 ATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCCTTTACATTT 140655
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|| | ||| ||||| | ||| ||||||||||| | || || || || || || || ||
Sbjct 140656 TCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAAGGGTCTTGACG 140715
Query 45330 AAAATTTGCAT 45340
|| ||||||||
Sbjct 140716 AAGATTTGCAT 140726
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | ||||| || ||||| || || |||||||||||||| || || || ||
Sbjct 139989 TTACCAGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATCTTG 140048
Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317
|| | ||| | ||||||||||| ||| ||||||||||| | || || || ||
Sbjct 140049 GCCTTCACATTTTCAATGGTGTCGGAAGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTA 140108
Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340
|| || || ||||| ||||||||
Sbjct 140109 AGGGTCTTGACAAAGATTTGCAT 140131
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/133 (75%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||| ||| ||||||||||| ||||| ||||| || |||||||| || ||| | || |
Sbjct 139702 ATCAGTCGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCTTTCA-CGTT 139760
Query 45270 -TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328
|| | ||| || |||| ||| |||||||| || | || ||||| || || || || ||
Sbjct 139761 CTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 139820
Query 45329 AAAAATTTGCATC 45341
|| || ||||||
Sbjct 139821 GAAGATCTGCATC 139833
>seq8832
Length=33236
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
|||||||| |||||||| || ||||| ||||| ||||| |||||||| || | |
Sbjct 23296 ATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCCTTTACATTT 23355
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|| | ||| ||||| | || ||||||||||| | ||| || || || ||||| || ||
Sbjct 23356 TCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGAGTCTTGACG 23415
Query 45330 AAAATTTGCAT 45340
|| ||||||||
Sbjct 23416 AAGATTTGCAT 23426
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260
|| ||| | |||||||||||||| || || ||||| ||||||||||| || || ||
Sbjct 22986 CCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 23045
Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320
|||| ||| | |||||| |||| |||||||| || || | || || || || ||
Sbjct 23046 TTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGAGG 23105
Query 45321 GTTTTTACAAAAATTTGCAT 45340
|| || ||||| || |||||
Sbjct 23106 GTCTTGACAAAGATCTGCAT 23125
>seq8275
Length=204344
Score = 93.3 bits (102), Expect = 4e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 45215 TCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTAC 45274
||||||||| ||||| ||||| ||||| ||||||||||| ||| ||| | ||| |
Sbjct 59409 TCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGCTTTCACATTTTCAAT 59350
Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334
|||||||| | || || ||||| || | || || |||||||| ||||| ||||| ||
Sbjct 59349 AGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGGGTTTTCACAAAGAT 59290
Query 45335 TTGCAT 45340
|||||
Sbjct 59289 CTGCAT 59284
Score = 82.4 bits (90), Expect = 7e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||| | ||| |||||||| || ||||||||||| ||||||||||| || || |
Sbjct 59710 ATATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTGGCCTTCACAT 59651
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
|| | ||||| || | ||||||||| || || | ||| || || || | || ||||
Sbjct 59650 TCTCAATTGTGTCCGAGGCCTCGACTTCCAGGGTGATCGTCTTTCCAGTCAATGTCTTTA 59591
Query 45328 CAAAAATTTGCAT 45340
|||| ||||||||
Sbjct 59590 CAAAGATTTGCAT 59578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451930229733400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |