Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq899 89.7 6e-13
seq7056 84.2 3e-11
>seq899
Length=82215
Score = 89.7 bits (98), Expect = 6e-13
Identities = 172/249 (69%), Gaps = 5/249 (2%)
Strand=Plus/Minus
Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC--TTGC-GACGACCAGCC 116913
|| || || ||||||||||||||||| | || | || ||| | || | ||| |
Sbjct 23001 ATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCCT 22942
Query 116914 TGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGAT 116973
|||| || || | || || ||| |||| |||||||| ||||| | |||| ||||
Sbjct 22941 TGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGAT 22882
Query 116974 TGGCCATTTGTCCCCCGAATACGAGA-CTTGTTGGCTCTGACATCGTGGATGTGCATACC 117032
||||||||| ||| ||| |||| | ||| ||||||| || ||| | || || |||
Sbjct 22881 GTGCCATTTGTTCCCGCAATCAGAGATCCAGTT-GCTCTGATATTGTGCACGTTCAGACC 22823
Query 117033 AATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATC 117092
|| || || || | ||| ||||| |||| || | | | | | || ||||||| ||| |
Sbjct 22822 TATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAGC 22763
Query 117093 GATCGAGTC 117101
|| || ||
Sbjct 22762 AATGGAATC 22754
>seq7056
Length=51435
Score = 84.2 bits (92), Expect = 3e-11
Identities = 194/290 (67%), Gaps = 3/290 (1%)
Strand=Plus/Plus
Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC--TTGC-GACGACCAGCC 116913
|| || || ||||| ||||||||||| | |||| || ||| | || | ||| |
Sbjct 22470 ATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTACCGCCT 22529
Query 116914 TGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGAT 116973
|||| ||||| | || || ||| |||| |||||||| ||||| | |||| |||
Sbjct 22530 TGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCATTGGAT 22589
Query 116974 TGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCA 117033
||||||||| ||| ||| | || | ||||||| || ||| | || || |||
Sbjct 22590 GTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGTTCAGACCT 22649
Query 117034 ATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 117093
|| || || || | ||| ||||| | || || | | | | | || |||| || ||| |
Sbjct 22650 ATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATGCCAGCA 22709
Query 117094 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143
||||| || | | ||| | |||||| || |||| |||||||||
Sbjct 22710 ATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTGTGGCCT 22759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613408156931400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |