Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq899 89.7 6e-13 seq7056 84.2 3e-11 >seq899 Length=82215 Score = 89.7 bits (98), Expect = 6e-13 Identities = 172/249 (69%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC--TTGC-GACGACCAGCC 116913 || || || ||||||||||||||||| | || | || ||| | || | ||| | Sbjct 23001 ATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCCT 22942 Query 116914 TGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGAT 116973 |||| || || | || || ||| |||| |||||||| ||||| | |||| |||| Sbjct 22941 TGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGAT 22882 Query 116974 TGGCCATTTGTCCCCCGAATACGAGA-CTTGTTGGCTCTGACATCGTGGATGTGCATACC 117032 ||||||||| ||| ||| |||| | ||| ||||||| || ||| | || || ||| Sbjct 22881 GTGCCATTTGTTCCCGCAATCAGAGATCCAGTT-GCTCTGATATTGTGCACGTTCAGACC 22823 Query 117033 AATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATC 117092 || || || || | ||| ||||| |||| || | | | | | || ||||||| ||| | Sbjct 22822 TATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAGC 22763 Query 117093 GATCGAGTC 117101 || || || Sbjct 22762 AATGGAATC 22754 >seq7056 Length=51435 Score = 84.2 bits (92), Expect = 3e-11 Identities = 194/290 (67%), Gaps = 3/290 (1%) Strand=Plus/Plus Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC--TTGC-GACGACCAGCC 116913 || || || ||||| ||||||||||| | |||| || ||| | || | ||| | Sbjct 22470 ATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTACCGCCT 22529 Query 116914 TGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGAT 116973 |||| ||||| | || || ||| |||| |||||||| ||||| | |||| ||| Sbjct 22530 TGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCATTGGAT 22589 Query 116974 TGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCA 117033 ||||||||| ||| ||| | || | ||||||| || ||| | || || ||| Sbjct 22590 GTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGTTCAGACCT 22649 Query 117034 ATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 117093 || || || || | ||| ||||| | || || | | | | | || |||| || ||| | Sbjct 22650 ATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATGCCAGCA 22709 Query 117094 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143 ||||| || | | ||| | |||||| || |||| ||||||||| Sbjct 22710 ATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTGTGGCCT 22759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613408156931400