Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8832 82.4 8e-11 >seq8832 Length=33236 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||||| | Sbjct 23723 AATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTC 23664 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | | | | |||| | || | || || | ||||||||||| |||||| | |||| Sbjct 23663 CGATACCATCGAGAACG-TCAAGGCCAAGATTCAGGACAAAGAGGGGATTCCCCCAGACC 23605 Query 38362 AACAGCG 38368 | ||||| Sbjct 23604 AGCAGCG 23598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500092053353600