Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq7757 118 4e-21 seq9358 107 8e-18 seq8640 96.9 1e-14 seq8832 91.5 6e-13 seq8587 91.5 6e-13 seq8275 91.5 6e-13 seq8716 86.0 2e-11 seq8131 86.0 2e-11 >seq7757 Length=212262 Score = 118 bits (130), Expect = 4e-21 Identities = 158/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||| || ||||| ||||| ||||||| | || |||||||| |||| || ||| Sbjct 115511 TTTGCCCCCGAAGAGATTTCCGCTATGGTCTTGACGAAAATGAAGGAAATCGCTGAATCC 115570 Query 451298 TATATTGGTTCTCCAGTTACTGATGCA----GTAATTACTGTTCCCGCTTATTTCAATGA 451353 ||| | || | || | ||| ||| || |||| || || ||||| ||||| || Sbjct 115571 TATCTCGG----CAAGGAAGTGAAGCACGCCGTTGTTACCGTACCGGCTTACTTCAACGA 115626 Query 451354 TGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAAT 451413 ||| ||||| |||||||| || || |||||| || ||||||||||||||| | ||||| Sbjct 115627 TGCTCAACGTCAAGCAACAAAGGACGCAGGAACGATCGCTGGTTTAAATGTTGTCCGAAT 115686 Query 451414 TATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACT 451452 ||| || || || || || || ||| | || || || || Sbjct 115687 TATCAACGAGCCCACCGCTGCCGCTATCGCCTACGGTCT 115725 >seq9358 Length=25477 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || ||||| || || | ||||| || ||||||||||| | || ||| ||| || Sbjct 19170 CCGGAAGAGATCTCTGCCATGGTCCTCGGAAAAATGAAAGAGATTGCTGAATCGTATCTT 19111 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 || ||| | | || || | || || || |||||||||||||| || || || Sbjct 19110 GGAAAGGAAGTGAAGCACGCGGTCGTGACGGTACCAGCTTATTTCAATGACGCTCAGCGA 19051 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || || |||||||| ||| |||||||| ||||| ||| |||| || || |||||| Sbjct 19050 CAGGCCACCAAAGATGCGGGAACGATTGCTGGATTAAACGTTGTTCGTATCATCAATGAA 18991 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACT 451452 || || || |||||| | |||||||| || Sbjct 18990 CCAACTGCTGCTGCTATCGCATATGGGCT 18962 Score = 91.5 bits (100), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||||||||||||||| ||||| | ||| ||||| ||||| ||| |||||||| ||| Sbjct 19815 ATTGGAATTGATCTTGGCACCACGTATTCCTGTGTCGGTGTGTACAAAAATGGACGAGTA 19756 Query 450977 GAAATTATAGCAAATGACCAAGG 450999 |||||||| || ||||| ||||| Sbjct 19755 GAAATTATTGCTAATGATCAAGG 19733 >seq8640 Length=189999 Score = 96.9 bits (106), Expect = 1e-14 Identities = 194/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || | || || || || || ||||| || | ||||| ||||| || |||||| Sbjct 71648 GATGCTGTTGTCACAGTACCAGCGTACTTCAACGACTCTCAACGTCAAGCTACCAAAGAT 71707 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 |||||| ||||||||| | ||||| ||||| || || || ||||| || || |||||| Sbjct 71708 GCAGGAGCAATTGCTGGTCTCAATGTCCTTCGTATCATCAACGAACCCACCGCTGCTGCT 71767 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 | || || || |||| || || | ||| | || ||| | | | || ||| Sbjct 71768 ATCGCCTACGGTCTAGACAA---GAAGGGAACCGGCGAGCGAAACGTGCTCATTTTCGAT 71824 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 |||| || || || ||| || | ||| | ||||| ||||| | |||||||| Sbjct 71825 CTTGGAGGCGGTACCTTCGATGTGTCGATCCTTACCATTGAGGATGGAATCTTTGAAGTG 71884 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || | || ||| || || || || ||||| || || |||| || Sbjct 71885 AAATCTACAGCTGGAGACACCCACCTTGGAGGAGAGGACTTTGACAA 71931 >seq8832 Length=33236 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || ||||| || || || ||||| || |||||| |||| Sbjct 23427 AATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACGATCACTCTCGAAGTTGAAGCATC 23368 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| ||| | | || |||||||| ||||||||||||||||| || || || Sbjct 23367 CGATACCATCGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGAATTCCACCAGACCA 23308 Query 391169 ACAACGTTTAATTTT 391183 || || || || || Sbjct 23307 GCAGCGATTGATCTT 23293 >seq8587 Length=192155 Score = 91.5 bits (100), Expect = 6e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| || || || ||||| || || || ||||| || ||||| |||| Sbjct 140727 AATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACAATCACTCTCGAAGTTGAGGCATC 140668 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| ||| | | || |||||||||||||||||||||||||| || || || Sbjct 140667 CGATACCATCGAAAATGTAAAGGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGACCA 140608 Query 391169 ACAACGTTTAATTTT 391183 || || || || || Sbjct 140607 GCAGCGATTGATCTT 140593 >seq8275 Length=204344 Score = 91.5 bits (100), Expect = 6e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || ||||| |||||||||||| | || || || |||| Sbjct 61051 ATGCAGATCTTCGTGAAAACTCTAACTGGAAAAACTATTACTTTGGAAGTGGAGGCATCC 61110 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || ||||| || || ||||||||||| ||||||||| Sbjct 61111 GATACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 61170 Query 391170 CAACG 391174 || || Sbjct 61171 CAGCG 61175 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || ||||| || || || || || || || || || |||||| | || Sbjct 59284 ATGCAGATCTTTGTGAAAACCCTAACCGGGAAGACAATCACACTCGAGGTTGAAGCCTCC 59343 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | | ||| ||| ||||||||||||||||||||||| || ||||| Sbjct 59344 GACACTATTGAAAATGTGAAAGCAAAGATTCAAGATAAGGAAGGAATTCCACCGGATCAG 59403 Query 391170 CAACG 391174 ||||| Sbjct 59404 CAACG 59408 >seq8716 Length=186993 Score = 86.0 bits (94), Expect = 2e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 391048 TAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCAT 391107 ||||| | || ||||| || || || || || |||||||| || || || ||||| | | Sbjct 74657 TAATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACTATCACCCTGGAGGTTGAGGCCT 74598 Query 391108 CTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 | |||| ||| || | | || || ||||| |||||||||||||| || ||||||| Sbjct 74597 CCGATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATCCCGCCTGATC 74538 Query 391168 AACAACGTTTAATTTTCTCAGGGAAAC 391194 | || || | || ||| |||| |||| Sbjct 74537 AGCAGCGACTTATCTTCGCAGGTAAAC 74511 >seq8131 Length=46037 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 391048 TAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCAT 391107 ||||| | || ||||| || || || || || ||||| || || || || ||||| | | Sbjct 31728 TAATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACCATCACCCTCGAGGTTGAGGCCT 31669 Query 391108 CTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 |||||| ||| || | | || || ||||| ||||||||||||||||| ||||||| Sbjct 31668 CTGATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCGCCTGATC 31609 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAA 391202 | || || | || ||| |||| || |||||| Sbjct 31608 AGCAGCGACTTATCTTCGCAGGTGAATTTCTTGAA 31574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975391471084820