Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq8640 197 1e-44 seq9358 105 5e-17 >seq8640 Length=189999 Score = 197 bits (218), Expect = 1e-44 Identities = 657/1012 (65%), Gaps = 10/1012 (1%) Strand=Plus/Minus Query 517301 ACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCC 517360 || |||||||| || || ||||| | |||||||| || || || | ||| |||| Sbjct 72654 ACCTCAATTTGCGGTACGCCTCTTGGTGCAGGTGGAATTCCAGACAGCTCGAATTTTCCA 72595 Query 517361 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA 517420 || ||| || || ||||| | | ||||| || ||||| | ||||| || || Sbjct 72594 AGTAGATTGTTGTCCTTAGTCATTGCACGTTCTCCTTCGAAGACCTGGATGAGCACACCA 72535 Query 517421 GTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTT 517479 | || || || || || || || ||| ||||| | | | | ||||| || ||||| Sbjct 72534 GGCTGGTTGTCAGAGTAGGTGGTGAATG-TCTGGCTGGTCTTCGTTGGAATGGTGGTGTT 72476 Query 517480 TCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGT 517539 || | || | | ||||| | ||| || || ||||| | ||| || || ||||| | Sbjct 72475 CCTCTTGATCAAAGCTGTCATTACACCTCCAGCGGTTTCGATACCGAGTGATAGAGGCGC 72416 Query 517540 GACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGC 517599 ||||| | |||| | || || | || | | ||| ||||||||| || Sbjct 72415 CACATCGAGAAGGAGCAGATCCTGCACAGCCTCCGACTTGTCACCGGAAAGAATAGCGGC 72356 Query 517600 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTT 517659 ||||| || || || || |||||||| |||||||| || | | | || |||| ||| Sbjct 72355 TTGAACTGCGGCTCCGTAGGCAACAGCCTCATCAGGGTTGATCGACTTGTTGAGTTCTTT 72296 Query 517660 ACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAA 517718 ||| ||| | || || || || | ||| || || |||||||||| ||||||||||| Sbjct 72295 TCCAGAGAACAGATCAGATAGCAGCT-TCTGCACTTTTGGAATACGAGTTGATCCTCCAA 72237 Query 517719 CTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAA 517778 | | || || ||||| | ||| || |||| || | ||| | || |||| Sbjct 72236 CAAGAACGATATCATGGATCTGGCTCTTGTCCATCTTAGCATCTCTCAGCGACTTCTCAA 72177 Query 517779 CGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA 517838 | || || | | | || | || | || || || |||||| || | ||||| Sbjct 72176 CAGGATCCATGGTGGAACGGAAAAGATCAGCGCACAGCTCCTCGAATCGGGCACGAGTAA 72117 Query 517839 GAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC 517897 || | || || || || || ||||| | ||||||| ||| |||| || || | | Sbjct 72116 T-GTTAGTGTAGAAATCGATACCCTCGAAGAGTGAATCAATTTCGATCGAAGCCTGGGAC 72058 Query 517898 GAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTT 517957 ||||| || || | ||| || |||||||| || || || | || | ||| | || Sbjct 72057 GAAGATGAAAGGGTACGCTTGGCACGTTCGCAAGCAGTACGAAGACGTCGCAGAGCACGA 71998 Query 517958 GCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTA 518015 | ||||| | | | ||| | || | || |||||||| || | || | | | Sbjct 71997 G--GATTGGTGTTGAGATCCTTCTTGTGCTTCCTCTTGAATTCAGCGACGAAGTGGTTCA 71940 Query 518016 CAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTT 518075 | | ||| || ||||| || || ||||| | | || | ||| | |||| | | |||| Sbjct 71939 CCATACGGTTGTCAAAGTCCTCTCCTCCAAGGTGGGTGTCTCCAGCTGTAGATTTCACTT 71880 Query 518076 GGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAA 518135 || | |||||| |||| | | | | ||||| ||| || || || | ||| | Sbjct 71879 CAAAGATTCCATCCTCAATGGTAAGGATCGACACATCGAAGGTACCGCCTCCAAGATCGA 71820 Query 518136 AAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 518195 |||| || || || || | | || || || ||||| || || | |||||||| Sbjct 71819 AAATGAGCACGTTTCGCTCGCCGGTTCCCTTCTTGTCTAGACCGTAGGCGATAGCAGCAG 71760 Query 518196 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 518255 | || ||||| || || || | | ||||| |||||||||||| |||||||||||| | Sbjct 71759 CGGTGGGTTCGTTGATGATACGAAGGACATTGAGACCAGCAATTGCTCCTGCATCTTTGG 71700 Query 518256 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 | ||||| | ||| || ||||| || || || || || || | ||| ||||| Sbjct 71699 TAGCTTGACGTTGAGAGTCGTTGAAGTACGCTGGTACTGTGACAACAGCATC 71648 >seq9358 Length=25477 Score = 105 bits (116), Expect = 5e-17 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || |||||||| ||||| || | ||||||||||||||||||||| || || | | ||| Sbjct 18953 TTCTTATCAAGCCCATATGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAACAACG 19012 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || | |||||||| |||| |||||||| ||||| |||| || | || || ||||| Sbjct 19013 TTTAATCCAGCAATCGTTCCCGCATCTTTGGTGGCCTGTCGCTGAGCGTCATTGAAATAA 19072 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTTT 518342 || || || || | || || | | ||||| || |||| ||| || || || | | Sbjct 19073 GCTGGTACCGTCACGACCGCGTGCTTCACTTCCTTTCCAAGATA--CGATTCAGCAATCT 19130 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCAT 518402 ||||||||| | | | ||| | || || | ||| || | | ||||||| ||| | Sbjct 19131 CTTTCATTTTTCCGAGGACCATGGCAGAGATCTCTTCCGGTGTGAACTGCTTGGTTTCTT 19190 Query 518403 T 518403 | Sbjct 19191 T 19191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780181515157990