Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq8640 289 4e-73 seq9358 174 2e-38 seq7757 168 8e-37 >seq8640 Length=189999 Score = 289 bits (320), Expect = 4e-73 Identities = 675/1013 (67%), Gaps = 4/1013 (0%) Strand=Plus/Minus Query 6728 CTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTA 6787 ||||| | |||||| ||| || || ||||| | |||||| || | | || ||| | Sbjct 72657 CTTACCTCAATTTGCGGTACGCCTCTTGGTGCAGGTGGAATTCCAGACAGCTCGAATTTT 72598 Query 6788 CCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACC 6847 ||||||| | |||| ||| | | | | |||||| ||||| |||| | || ||| Sbjct 72597 CCAAGTAGATTGTTGTCCTTAGTCATTGCACGTTCTCCTTCGAAGACCTGGATGAGCACA 72538 Query 6848 GCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTA 6907 |||| || || || || | ||| | || |||| | |||||| || || Sbjct 72537 CCAGGCTGGTTGTCAGAGTAGGTGGTGAATGTCTGGCTGGTCTTCGTTGGAATGGTGGTG 72478 Query 6908 TTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGT 6967 || ||| || | | ||||| | ||| || ||||||| || || || ||||| Sbjct 72477 TTCCTCTTGATCAAAGCTGTCATTACACCTCCAGCGGTTTCGATACCGAGTGATAGAGGC 72418 Query 6968 GTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCG 7027 | ||| || | || | ||| || || |||| || | ||||| | | || ||| Sbjct 72417 GCCACATCGAGAAGGAGCAGATCCTGCACAGCCTCCGACTTGTCACCGGAAAGAATAGCG 72358 Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 ||||| || | || ||||| || || |||||||| ||||| |||| || || |||||| Sbjct 72357 GCTTGAACTGCGGCTCCGTAGGCAACAGCCTCATCAGGGTTGATCGACTTGTTGAGTTCT 72298 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 || || || ||| |||| || | || | ||| || || || || ||||| || Sbjct 72297 TTTCCAGAGAACAGATCAGATAGCAGCTTCTGCACTTTTGGAATACGAGTTGATCCTCCA 72238 Query 7148 ACCAAAACGATTTCATTCACTTTCGAT-TTATCGATCTTTGAGTCTCGAAGTGTTTTTTC 7206 || | |||||| |||| | | | | | || || ||||| | |||| || | || || Sbjct 72237 ACAAGAACGATATCATGGA-TCTGGCTCTTGTCCATCTTAGCATCTCTCAGCGACTTCTC 72179 Query 7207 GACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGT 7266 ||||| ||||| |||||| | || ||||| ||||| || || ||||| || Sbjct 72178 AACAGGATCCATGGTGGAACGGAAAAGATCAGCGCACAGCTCCTCGAATCGGGCACGAGT 72119 Query 7267 AATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGC 7326 |||| || |||||||| | || ||| | | ||||||||||| || | | || | Sbjct 72118 AATGTTAGTGTAGAAATCGATACCCTCGAAGAGTGAATCAATTTCGATCGAAGCCTGGGA 72059 Query 7327 CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 || || || | || ||||| || || || || || || || | ||| || || ||||| Sbjct 72058 CGAAGATGAAAGGGTACGCTTGGCACGTTCGCAAGCAGTACGAAGACGTCGCAGAGCACG 71999 Query 7387 CGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAG 7446 || || | | ||| ||||| || || | || || || | |||||| | Sbjct 71998 AGGATTGGTGTTGAGATCCTTCTTGTGCTTCCTCTTGAATTCAGCGACGAAGTGGTTCAC 71939 Query 7447 GAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTC 7506 | | || || || || || || | ||| || || || || || | ||| ||||| Sbjct 71938 CATACGGTTGTCAAAGTCCTCTCCTCCAAGGTGGGTGTCTCCAGCTGTAGATTTCACTTC 71879 Query 7507 AAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA 7566 |||||| || | |||||| | | | ||| ||||| || ||||| || || || || || Sbjct 71878 AAAGATTCCATCCTCAATGGTAAGGATCGACACATCGAAGGTACCGCCTCCAAGATCGAA 71819 Query 7567 AATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGC 7626 |||||| ||||| ||| || | ||||| || |||||||| |||||||| || || Sbjct 71818 AATGAGCACGTTTCGCTCGCCGGTTCCCTTCTTGTCTAGACCGTAGGCGATAGCAGCAGC 71759 Query 7627 CGTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCG 7685 || ||||| || || ||||||| |||| || || |||||||| | | | |||||||| | Sbjct 71758 GGTGGGTTCGTTGATGATACGAAGGACA-TTGAGACCAGCAATTGCTCCTGCATCTTTGG 71700 Query 7686 TCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738 | ||||| ||||| || ||||| ||||| || || || || || || || ||| Sbjct 71699 TAGCTTGACGTTGAGAGTCGTTGAAGTACGCTGGTACTGTGACAACAGCATCC 71647 >seq9358 Length=25477 Score = 174 bits (192), Expect = 2e-38 Identities = 180/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 |||||||| || || || |||||||| || || ||||||||||| || ||||||| | | Sbjct 18953 TTCTTATCAAGCCCATATGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAACAACG 19012 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || | |||||||| ||| |||||||||| || || ||||| || | || || || || Sbjct 19013 TTTAATCCAGCAATCGTTCCCGCATCTTTGGTGGCCTGTCGCTGAGCGTCATTGAAATAA 19072 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || ||||| |||||||||| | | |||| ||| || ||||||||||| || || ||| Sbjct 19073 GCTGGTACCGTCACGACCGCGTGCTTCACTTCCTTTCCAAGATACGATTCAGCAATCTCT 19132 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTC 7830 |||||||| || ||||| | || |||||||| | | ||||| || ||||| Sbjct 19133 TTCATTTTTCCGAGGACCATGGCAGAGATCTCTTCCGGTGTGAACTGCTTGGTTTC 19188 >seq7757 Length=212262 Score = 168 bits (186), Expect = 8e-37 Identities = 179/236 (76%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || |||||||| |||||||| || || || || || || ||||| || | | Sbjct 115734 TTCTTGTCAAGACCGTAGGCGATAGCGGCAGCGGTGGGCTCGTTGATAATTCGGACAACA 115675 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || | ||||| || ||| | || || || || ||||| ||||| | |||||| ||||| Sbjct 115674 TTTAAACCAGCGATCGTTCCTGCGTCCTTTGTTGCTTGACGTTGAGCATCGTTGAAGTAA 115615 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 ||||| || || || || |||| | | |||| ||| |||||||| ||||| ||||| || Sbjct 115614 GCCGGTACGGTAACAACGGCGTGCTTCACTTCCTTGCCGAGATAGGATTCAGCGATTTCC 115555 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTC 7830 |||||||| || | ||||| | ||||||||||| | |||||||||||| |||| Sbjct 115554 TTCATTTTCGTCAAGACCATAGCGGAAATCTCTTCGGGGGCAAACTGTTTCATTTC 115499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635030265748600