Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq8640 289 4e-73
seq9358 174 2e-38
seq7757 168 8e-37
>seq8640
Length=189999
Score = 289 bits (320), Expect = 4e-73
Identities = 675/1013 (67%), Gaps = 4/1013 (0%)
Strand=Plus/Minus
Query 6728 CTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTA 6787
||||| | |||||| ||| || || ||||| | |||||| || | | || ||| |
Sbjct 72657 CTTACCTCAATTTGCGGTACGCCTCTTGGTGCAGGTGGAATTCCAGACAGCTCGAATTTT 72598
Query 6788 CCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACC 6847
||||||| | |||| ||| | | | | |||||| ||||| |||| | || |||
Sbjct 72597 CCAAGTAGATTGTTGTCCTTAGTCATTGCACGTTCTCCTTCGAAGACCTGGATGAGCACA 72538
Query 6848 GCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTA 6907
|||| || || || || | ||| | || |||| | |||||| || ||
Sbjct 72537 CCAGGCTGGTTGTCAGAGTAGGTGGTGAATGTCTGGCTGGTCTTCGTTGGAATGGTGGTG 72478
Query 6908 TTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGT 6967
|| ||| || | | ||||| | ||| || ||||||| || || || |||||
Sbjct 72477 TTCCTCTTGATCAAAGCTGTCATTACACCTCCAGCGGTTTCGATACCGAGTGATAGAGGC 72418
Query 6968 GTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCG 7027
| ||| || | || | ||| || || |||| || | ||||| | | || |||
Sbjct 72417 GCCACATCGAGAAGGAGCAGATCCTGCACAGCCTCCGACTTGTCACCGGAAAGAATAGCG 72358
Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087
||||| || | || ||||| || || |||||||| ||||| |||| || || ||||||
Sbjct 72357 GCTTGAACTGCGGCTCCGTAGGCAACAGCCTCATCAGGGTTGATCGACTTGTTGAGTTCT 72298
Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147
|| || || ||| |||| || | || | ||| || || || || ||||| ||
Sbjct 72297 TTTCCAGAGAACAGATCAGATAGCAGCTTCTGCACTTTTGGAATACGAGTTGATCCTCCA 72238
Query 7148 ACCAAAACGATTTCATTCACTTTCGAT-TTATCGATCTTTGAGTCTCGAAGTGTTTTTTC 7206
|| | |||||| |||| | | | | | || || ||||| | |||| || | || ||
Sbjct 72237 ACAAGAACGATATCATGGA-TCTGGCTCTTGTCCATCTTAGCATCTCTCAGCGACTTCTC 72179
Query 7207 GACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGT 7266
||||| ||||| |||||| | || ||||| ||||| || || ||||| ||
Sbjct 72178 AACAGGATCCATGGTGGAACGGAAAAGATCAGCGCACAGCTCCTCGAATCGGGCACGAGT 72119
Query 7267 AATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGC 7326
|||| || |||||||| | || ||| | | ||||||||||| || | | || |
Sbjct 72118 AATGTTAGTGTAGAAATCGATACCCTCGAAGAGTGAATCAATTTCGATCGAAGCCTGGGA 72059
Query 7327 CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386
|| || || | || ||||| || || || || || || || | ||| || || |||||
Sbjct 72058 CGAAGATGAAAGGGTACGCTTGGCACGTTCGCAAGCAGTACGAAGACGTCGCAGAGCACG 71999
Query 7387 CGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAG 7446
|| || | | ||| ||||| || || | || || || | |||||| |
Sbjct 71998 AGGATTGGTGTTGAGATCCTTCTTGTGCTTCCTCTTGAATTCAGCGACGAAGTGGTTCAC 71939
Query 7447 GAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTC 7506
| | || || || || || || | ||| || || || || || | ||| |||||
Sbjct 71938 CATACGGTTGTCAAAGTCCTCTCCTCCAAGGTGGGTGTCTCCAGCTGTAGATTTCACTTC 71879
Query 7507 AAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAA 7566
|||||| || | |||||| | | | ||| ||||| || ||||| || || || || ||
Sbjct 71878 AAAGATTCCATCCTCAATGGTAAGGATCGACACATCGAAGGTACCGCCTCCAAGATCGAA 71819
Query 7567 AATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGC 7626
|||||| ||||| ||| || | ||||| || |||||||| |||||||| || ||
Sbjct 71818 AATGAGCACGTTTCGCTCGCCGGTTCCCTTCTTGTCTAGACCGTAGGCGATAGCAGCAGC 71759
Query 7627 CGTTGGTTCATTAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCG 7685
|| ||||| || || ||||||| |||| || || |||||||| | | | |||||||| |
Sbjct 71758 GGTGGGTTCGTTGATGATACGAAGGACA-TTGAGACCAGCAATTGCTCCTGCATCTTTGG 71700
Query 7686 TCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCC 7738
| ||||| ||||| || ||||| ||||| || || || || || || || |||
Sbjct 71699 TAGCTTGACGTTGAGAGTCGTTGAAGTACGCTGGTACTGTGACAACAGCATCC 71647
>seq9358
Length=25477
Score = 174 bits (192), Expect = 2e-38
Identities = 180/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
|||||||| || || || |||||||| || || ||||||||||| || ||||||| | |
Sbjct 18953 TTCTTATCAAGCCCATATGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAACAACG 19012
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| | |||||||| ||| |||||||||| || || ||||| || | || || || ||
Sbjct 19013 TTTAATCCAGCAATCGTTCCCGCATCTTTGGTGGCCTGTCGCTGAGCGTCATTGAAATAA 19072
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
|| || ||||| |||||||||| | | |||| ||| || ||||||||||| || || |||
Sbjct 19073 GCTGGTACCGTCACGACCGCGTGCTTCACTTCCTTTCCAAGATACGATTCAGCAATCTCT 19132
Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTC 7830
|||||||| || ||||| | || |||||||| | | ||||| || |||||
Sbjct 19133 TTCATTTTTCCGAGGACCATGGCAGAGATCTCTTCCGGTGTGAACTGCTTGGTTTC 19188
>seq7757
Length=212262
Score = 168 bits (186), Expect = 8e-37
Identities = 179/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654
||||| || |||||||| |||||||| || || || || || || ||||| || | |
Sbjct 115734 TTCTTGTCAAGACCGTAGGCGATAGCGGCAGCGGTGGGCTCGTTGATAATTCGGACAACA 115675
Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714
|| | ||||| || ||| | || || || || ||||| ||||| | |||||| |||||
Sbjct 115674 TTTAAACCAGCGATCGTTCCTGCGTCCTTTGTTGCTTGACGTTGAGCATCGTTGAAGTAA 115615
Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774
||||| || || || || |||| | | |||| ||| |||||||| ||||| ||||| ||
Sbjct 115614 GCCGGTACGGTAACAACGGCGTGCTTCACTTCCTTGCCGAGATAGGATTCAGCGATTTCC 115555
Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTC 7830
|||||||| || | ||||| | ||||||||||| | |||||||||||| ||||
Sbjct 115554 TTCATTTTCGTCAAGACCATAGCGGAAATCTCTTCGGGGGCAAACTGTTTCATTTC 115499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635030265748600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |