Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq7056 104 3e-17 >seq7056 Length=51435 Score = 104 bits (114), Expect = 3e-17 Identities = 202/298 (68%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 111747 AGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATT 111806 || || ||| |||| ||||||||| | ||| | |||||||| || ||||||| Sbjct 22759 AGGCCACAACTGTCTTCTTGTTTCCTCCTAACAATGAGCGAGGATTCGATTGCTGGCATT 22700 Query 111807 TACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCAC 111866 |||| |||| | | ||||||||| ||||| ||| | || ||||| || || || || Sbjct 22699 TACGACACTTTGAAGCAATGTGCCCTGATCTCCAAGAGTGCCGGTGGAATAGGTCTGAAC 22640 Query 111867 ATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGT 111926 | || || ||||||| | || | ||| || |||||||| ||| |||| Sbjct 22639 GTGCACAATATCAGAGCTACTGGATCGCTGATTGCGGGAACAAATGGCACATCCAATGGC 22580 Query 111927 ATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT 111986 | ||||| |||||||| |||| ||| ||| || || ||||| |||||| || | Sbjct 22579 TTGATTCCGATGCTTCGAGTATACAACAACACTGCACGTTATGTGGACCAAGGCGGTAAT 22520 Query 111987 ---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGT 112041 || |||| | ||||| |||| || || |||||||| || || || | |||| Sbjct 22519 AAGCGACCGGGAGCATTCGCAATCTACCTGGAACCATGGCATGCTGACATTTTCGAGT 22462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620642188898800