Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq7329 91.5 2e-13 seq7663 82.4 9e-11 >seq7329 Length=213854 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Plus Query 168429 CTTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGAC 168488 |||||||||||| |||||||| ||||| |||| | || || || || |||| || Sbjct 184611 CTTACCACGGAGAGGAAATACACCATAGCGATCGCGGCCGACCACACCAAGGCCAGAAAC 184670 Query 168489 AGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGC 168548 ||| | ||||| |||||||| ||||| || | || ||||| ||| | || || | Sbjct 184671 AGCCAACGTTTTGGCTGAATCTCCCTCAGTGAGAATCAGTGTGCACAGTTGTGA--GTTC 184728 Query 168549 C--GTACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACC 168587 | || ||||| | ||| ||||| |||||||| |||||||| Sbjct 184729 CTAGTGCCAGCGTCGTTAGCATCTTCCAATTTTGGGATACC 184769 >seq7663 Length=436145 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 119216 CACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATAAAGTCAAA 119275 |||| | |||||||||||||| ||||| ||||||| || ||||| ||||| |||||||| Sbjct 298813 CACCTTTTTTTCGAAGAAATTAGTCTTTCCATCGATAGAAATGTTCTCCATGAAGTCAAA 298754 Query 119276 AGGATTTTTGGAGTT 119290 |||||| || || || Sbjct 298753 AGGATTCTTCGACTT 298739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588880917187000