Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq8587 136 9e-27
seq8832 134 3e-26
seq8275 122 2e-22
seq8716 98.7 2e-15
seq8131 98.7 2e-15
>seq8587
Length=192155
Score = 136 bits (150), Expect = 9e-27
Identities = 116/143 (81%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
||||||||||||| | ||| || |||||||| ||||| || || ||||| ||||||||
Sbjct 140880 TACCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAG 140939
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|||||||||||||||||| |||||| ||| ||||||||||||| |||||||| || |
Sbjct 140940 CCTTGACGTTCTCAATGGTATCCGAAGCTTCGACTTCAAGGGTAATTGTCTTTCCAGTAA 140999
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
|| || ||||| | ||||||
Sbjct 141000 GGGTCTTGACGAAGATCTGCATT 141022
Score = 127 bits (140), Expect = 5e-24
Identities = 114/143 (80%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
||||||||||||| | |||||| || ||||| ||||| |||||||| || || || ||
Sbjct 140287 TACCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGG 140346
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
||||||||| ||||||||||||||| ||| ||||| ||||||| |||||||| || |
Sbjct 140347 CCTTGACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGA 140406
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
|| || ||||| | ||||||
Sbjct 140407 GGGTCTTCACGAATATCTGCATT 140429
Score = 125 bits (138), Expect = 2e-23
Identities = 113/142 (80%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
||||||||||||| ||||| || || ||||| ||||| || || ||||||||||| ||
Sbjct 141775 TACCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGG 141834
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || || ||||| ||||| ||| ||| |||||||| |||| |||||||||||||
Sbjct 141835 CTTTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCA 141894
Query 195119 AAGTTTTTACGAACACTTGCAT 195140
|||||| ||||| | |||||
Sbjct 141895 GAGTTTTGACGAAAATCTGCAT 141916
Score = 104 bits (114), Expect = 5e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|||||| |||||||| | || || || ||||||||||||||||||||||| || || ||
Sbjct 139988 CTTACCAGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATCTT 140047
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || || ||||||||||| ||| || ||||| || || | |||||||| ||
Sbjct 140048 GGCCTTCACATTTTCAATGGTGTCGGAAGCCTCAACTTCGAGAGTGATTGTCTTTCCAGT 140107
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
| || || || || | |||||||
Sbjct 140108 AAGGGTCTTGACAAAGATTTGCATT 140132
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| || ||||| | |||||| || ||||| ||||| ||||||||||| || || ||
Sbjct 141468 TACCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGG 141527
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|||||| || ||||| || || || ||| |||||||| |||| |||||||| || |
Sbjct 141528 CCTTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAA 141587
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
||| || || || | ||||||
Sbjct 141588 GAGTCTTGACAAAGATCTGCATT 141610
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059
||| || ||||| ||||| || ||||| || ||||| ||||| ||||||||||| ||
Sbjct 139692 ACCAGCAAAGATCAGTCGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGAATCTTGGC 139751
Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119
|| |||||||| ||||| || ||| || ||||| ||||| | ||||| || || |
Sbjct 139752 TTTCACGTTCTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAG 139811
Query 195120 AGTTTTTACGAACACTTGCAT 195140
|| || ||||| | |||||
Sbjct 139812 GGTCTTGACGAAGATCTGCAT 139832
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| || ||||| | ||| || |||||||| ||||| ||||| || |||||||||||
Sbjct 140585 TACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGG 140644
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
||| || || || ||||| || || || ||||| || || | |||||||| || |
Sbjct 140645 CCTTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAA 140704
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
|| || ||||| | |||||||
Sbjct 140705 GGGTCTTGACGAAGATTTGCATT 140727
>seq8832
Length=33236
Score = 134 bits (148), Expect = 3e-26
Identities = 115/142 (81%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
||||||||||||| |||||||| || ||||| ||||| || || ||||||||||| ||
Sbjct 24476 TACCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGG 24535
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|| || || ||||||||||| ||| ||| |||||||| |||| |||||||||||||
Sbjct 24536 CTTTAACATTTTCAATGGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTCTTTCCTGTCA 24595
Query 195119 AAGTTTTTACGAACACTTGCAT 195140
|||||| ||||| | |||||
Sbjct 24596 GAGTTTTGACGAAAATCTGCAT 24617
Score = 114 bits (126), Expect = 3e-20
Identities = 111/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| |||||||| | |||||| || ||||| ||||| |||||||| || || || ||
Sbjct 22984 TACCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGG 23043
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
||||||||| || |||||||||||| ||| ||||||||||| | |||||||| || |
Sbjct 23044 CCTTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGA 23103
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
|| || || || | ||||||
Sbjct 23104 GGGTCTTGACAAAGATCTGCATT 23126
Score = 109 bits (120), Expect = 1e-18
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
||||||||||||| | ||| || |||||||| ||||| || |||||||| ||||| ||
Sbjct 23581 TACCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTGG 23640
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
|||||||||||| ||||| || ||| || ||||| ||||| | ||||| || || |
Sbjct 23641 CCTTGACGTTCTCGATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGA 23700
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
|| || ||||| | ||||||
Sbjct 23701 GGGTCTTAACGAAGATCTGCATT 23723
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058
|||| |||||||| | || || || || |||||||||||||||||||| || || ||
Sbjct 22687 TACCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGG 22746
Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118
||| || || |||||||| || ||| || ||||| ||||| | ||||| || || |
Sbjct 22747 CCTTCACATTTTCAATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGA 22806
Query 195119 AAGTTTTTACGAACACTTGCATT 195141
|| || ||||| | ||||||
Sbjct 22807 GGGTCTTGACGAAGATCTGCATT 22829
>seq8275
Length=204344
Score = 122 bits (134), Expect = 2e-22
Identities = 114/145 (79%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| ||| || || || ||||| || |||||||| ||||||||||| || |||||||| ||
Sbjct 59721 CTGACCGGCAAATATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTT 59662
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
||| || |||||||| |||||||| || ||||| ||||| | ||||||||| ||
Sbjct 59661 GGCCTTCACATTCTCAATTGTGTCCGAGGCCTCGACTTCCAGGGTGATCGTCTTTCCAGT 59602
Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141
||| || ||||| || | |||||||
Sbjct 59601 CAATGTCTTTACAAAGATTTGCATT 59577
Score = 114 bits (126), Expect = 3e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059
||| || ||||| || || || || ||||| || || ||||||||||| ||||| ||
Sbjct 60881 ACCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGC 60822
Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119
|||||||| ||||| ||||||||| ||||||||| | |||| || ||||| ||||
Sbjct 60821 TTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAG 60762
Query 195120 AGTTTTTACGAACACTTGCAT 195140
|||||| ||||| | ||||||
Sbjct 60761 AGTTTTCACGAAGATTTGCAT 60741
Score = 89.7 bits (98), Expect = 1e-12
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059
|||||| |||||||| || || || || || ||||| ||||| || |||||||| ||
Sbjct 60231 ACCTGCAAAGATAAGCCGCTGCTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTAGC 60172
Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119
|||||| || || || || || || || || || | |||| |||||||||||||||
Sbjct 60171 CTTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAA 60112
Query 195120 AGTTTTTACGAACACTTGCATT 195141
|| || || || | ||||||
Sbjct 60111 CGTCTTCACAAAGATCTGCATT 60090
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| ||| || |||||||||||||| || || || ||||| ||||| || |||||||| ||
Sbjct 59427 CTGACCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTT 59368
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| || || || ||||| ||||| || ||| || || || || | ||||| || ||
Sbjct 59367 TGCTTTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGT 59308
Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || || | |||||
Sbjct 59307 TAGGGTTTTCACAAAGATCTGCAT 59284
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059
||| || ||||| ||||| ||||| || || ||||| ||||||||||| ||||| ||
Sbjct 61191 ACCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 61132
Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119
|| || || || || || || || |||||||| | |||| || ||||| || |
Sbjct 61131 TTTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAG 61072
Query 195120 AGTTTTTACGAACACTTGCAT 195140
|||||| ||||| | |||||
Sbjct 61071 AGTTTTCACGAAGATCTGCAT 61051
>seq8716
Length=186993
Score = 98.7 bits (108), Expect = 2e-15
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|||||||||||||||||||| || || || || || || ||||| || || ||||| ||
Sbjct 74513 TTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTG 74572
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117
||| || ||||| ||||| || || || || || ||||| | || ||||| ||
Sbjct 74573 GCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCGTA 74632
Query 195118 AAAGTTTTTACGAACACTTGCATT 195141
| ||| |||||||| | |||||||
Sbjct 74633 AGAGTCTTTACGAAGATTTGCATT 74656
>seq8131
Length=46037
Score = 98.7 bits (108), Expect = 2e-15
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059
|||||||||||||||||| || || || || ||||| ||||| || || ||||| ||
Sbjct 31586 ACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTGGC 31645
Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119
||| || ||||| ||||| || || || || || ||||| | || ||||| || |
Sbjct 31646 CTTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGTTTTTCCCGTAAG 31705
Query 195120 AGTTTTTACGAACACTTGCATT 195141
||| |||||||| | |||||||
Sbjct 31706 AGTCTTTACGAAGATTTGCATT 31727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109298010265805
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