Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq8587 136 9e-27 seq8832 134 3e-26 seq8275 122 2e-22 seq8716 98.7 2e-15 seq8131 98.7 2e-15 >seq8587 Length=192155 Score = 136 bits (150), Expect = 9e-27 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||| | ||| || |||||||| ||||| || || ||||| |||||||| Sbjct 140880 TACCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAG 140939 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||||||||||||||| |||||| ||| ||||||||||||| |||||||| || | Sbjct 140940 CCTTGACGTTCTCAATGGTATCCGAAGCTTCGACTTCAAGGGTAATTGTCTTTCCAGTAA 140999 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 || || ||||| | |||||| Sbjct 141000 GGGTCTTGACGAAGATCTGCATT 141022 Score = 127 bits (140), Expect = 5e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||| | |||||| || ||||| ||||| |||||||| || || || || Sbjct 140287 TACCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGG 140346 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||||||| ||||||||||||||| ||| ||||| ||||||| |||||||| || | Sbjct 140347 CCTTGACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGA 140406 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 || || ||||| | |||||| Sbjct 140407 GGGTCTTCACGAATATCTGCATT 140429 Score = 125 bits (138), Expect = 2e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||| ||||| || || ||||| ||||| || || ||||||||||| || Sbjct 141775 TACCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGG 141834 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || ||||| ||||| ||| ||| |||||||| |||| ||||||||||||| Sbjct 141835 CTTTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCA 141894 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||||| ||||| | ||||| Sbjct 141895 GAGTTTTGACGAAAATCTGCAT 141916 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| | || || || ||||||||||||||||||||||| || || || Sbjct 139988 CTTACCAGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATCTT 140047 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||||||||| ||| || ||||| || || | |||||||| || Sbjct 140048 GGCCTTCACATTTTCAATGGTGTCGGAAGCCTCAACTTCGAGAGTGATTGTCTTTCCAGT 140107 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | || || || || | ||||||| Sbjct 140108 AAGGGTCTTGACAAAGATTTGCATT 140132 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || ||||| | |||||| || ||||| ||||| ||||||||||| || || || Sbjct 141468 TACCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGG 141527 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||| || ||||| || || || ||| |||||||| |||| |||||||| || | Sbjct 141528 CCTTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAA 141587 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 ||| || || || | |||||| Sbjct 141588 GAGTCTTGACAAAGATCTGCATT 141610 Score = 93.3 bits (102), Expect = 9e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| || ||||| ||||| || ||||| || ||||| ||||| ||||||||||| || Sbjct 139692 ACCAGCAAAGATCAGTCGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGAATCTTGGC 139751 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || |||||||| ||||| || ||| || ||||| ||||| | ||||| || || | Sbjct 139752 TTTCACGTTCTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAG 139811 Query 195120 AGTTTTTACGAACACTTGCAT 195140 || || ||||| | ||||| Sbjct 139812 GGTCTTGACGAAGATCTGCAT 139832 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || ||||| | ||| || |||||||| ||||| ||||| || ||||||||||| Sbjct 140585 TACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGG 140644 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| || || || ||||| || || || ||||| || || | |||||||| || | Sbjct 140645 CCTTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAA 140704 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 || || ||||| | ||||||| Sbjct 140705 GGGTCTTGACGAAGATTTGCATT 140727 >seq8832 Length=33236 Score = 134 bits (148), Expect = 3e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||| |||||||| || ||||| ||||| || || ||||||||||| || Sbjct 24476 TACCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGG 24535 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || ||||||||||| ||| ||| |||||||| |||| ||||||||||||| Sbjct 24536 CTTTAACATTTTCAATGGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTCTTTCCTGTCA 24595 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||||| ||||| | ||||| Sbjct 24596 GAGTTTTGACGAAAATCTGCAT 24617 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| |||||||| | |||||| || ||||| ||||| |||||||| || || || || Sbjct 22984 TACCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGG 23043 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||||||| || |||||||||||| ||| ||||||||||| | |||||||| || | Sbjct 23044 CCTTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGA 23103 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 || || || || | |||||| Sbjct 23104 GGGTCTTGACAAAGATCTGCATT 23126 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||||||||| | ||| || |||||||| ||||| || |||||||| ||||| || Sbjct 23581 TACCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTGG 23640 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 |||||||||||| ||||| || ||| || ||||| ||||| | ||||| || || | Sbjct 23641 CCTTGACGTTCTCGATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGA 23700 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 || || ||||| | |||||| Sbjct 23701 GGGTCTTAACGAAGATCTGCATT 23723 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| |||||||| | || || || || |||||||||||||||||||| || || || Sbjct 22687 TACCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGG 22746 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||| || || |||||||| || ||| || ||||| ||||| | ||||| || || | Sbjct 22747 CCTTCACATTTTCAATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGA 22806 Query 195119 AAGTTTTTACGAACACTTGCATT 195141 || || ||||| | |||||| Sbjct 22807 GGGTCTTGACGAAGATCTGCATT 22829 >seq8275 Length=204344 Score = 122 bits (134), Expect = 2e-22 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| || || || ||||| || |||||||| ||||||||||| || |||||||| || Sbjct 59721 CTGACCGGCAAATATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTT 59662 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || |||||||| |||||||| || ||||| ||||| | ||||||||| || Sbjct 59661 GGCCTTCACATTCTCAATTGTGTCCGAGGCCTCGACTTCCAGGGTGATCGTCTTTCCAGT 59602 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || ||||| || | ||||||| Sbjct 59601 CAATGTCTTTACAAAGATTTGCATT 59577 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| || ||||| || || || || ||||| || || ||||||||||| ||||| || Sbjct 60881 ACCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGC 60822 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||||| ||||| ||||||||| ||||||||| | |||| || ||||| |||| Sbjct 60821 TTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAG 60762 Query 195120 AGTTTTTACGAACACTTGCAT 195140 |||||| ||||| | |||||| Sbjct 60761 AGTTTTCACGAAGATTTGCAT 60741 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||| |||||||| || || || || || ||||| ||||| || |||||||| || Sbjct 60231 ACCTGCAAAGATAAGCCGCTGCTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTAGC 60172 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 |||||| || || || || || || || || || | |||| ||||||||||||||| Sbjct 60171 CTTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAA 60112 Query 195120 AGTTTTTACGAACACTTGCATT 195141 || || || || | |||||| Sbjct 60111 CGTCTTCACAAAGATCTGCATT 60090 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || ||| || |||||||||||||| || || || ||||| ||||| || |||||||| || Sbjct 59427 CTGACCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTT 59368 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || || || ||||| ||||| || ||| || || || || | ||||| || || Sbjct 59367 TGCTTTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGT 59308 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| Sbjct 59307 TAGGGTTTTCACAAAGATCTGCAT 59284 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| || ||||| ||||| ||||| || || ||||| ||||||||||| ||||| || Sbjct 61191 ACCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 61132 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 || || || || || || || || |||||||| | |||| || ||||| || | Sbjct 61131 TTTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAG 61072 Query 195120 AGTTTTTACGAACACTTGCAT 195140 |||||| ||||| | ||||| Sbjct 61071 AGTTTTCACGAAGATCTGCAT 61051 >seq8716 Length=186993 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||||||||||||||| || || || || || || ||||| || || ||||| || Sbjct 74513 TTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTG 74572 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || ||||| ||||| || || || || || ||||| | || ||||| || Sbjct 74573 GCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCGTA 74632 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| |||||||| | ||||||| Sbjct 74633 AGAGTCTTTACGAAGATTTGCATT 74656 >seq8131 Length=46037 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||||||||||||||| || || || || ||||| ||||| || || ||||| || Sbjct 31586 ACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTGGC 31645 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||| || ||||| ||||| || || || || || ||||| | || ||||| || | Sbjct 31646 CTTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGTTTTTCCCGTAAG 31705 Query 195120 AGTTTTTACGAACACTTGCATT 195141 ||| |||||||| | ||||||| Sbjct 31706 AGTCTTTACGAAGATTTGCATT 31727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109298010265805