Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq7056 116 4e-21
seq899 95.1 1e-14
>seq7056
Length=51435
Score = 116 bits (128), Expect = 4e-21
Identities = 198/287 (69%), Gaps = 0/287 (0%)
Strand=Plus/Plus
Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365
|| ||||||||||||||||| | || ||||| | | | || ||||| |||||||| |||
Sbjct 22470 ATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTACCGCCT 22529
Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425
|| || | ||| | ||||| ||||| || |||| | ||| || | | ||||| |||
Sbjct 22530 TGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCATTGGAT 22589
Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCT 48485
| ||||| ||||||| ||| |||| ||||||| ||||| | | ||||
Sbjct 22590 GTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGTTCAGACCT 22649
Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCT 48545
|| ||||| || | || || || || ||||| | || | || || ||||| || |
Sbjct 22650 ATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATGCCAGCA 22709
Query 48546 ATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592
|| ||| || |||| ||| || |||||| ||||| ||| ||
Sbjct 22710 ATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTGTGG 22756
>seq899
Length=82215
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365
|| ||||||||||| ||||| | || ||||| | | | || ||||| |||||||| |||
Sbjct 23001 ATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCCT 22942
Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425
|| || | || | ||||| ||||| || || | | ||| || | | ||||| |||
Sbjct 22941 TGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGAT 22882
Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCT 48485
| ||||| ||||||| ||| | |||| | ||||| ||||| | | ||||
Sbjct 22881 GTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGTTCAGACCT 22822
Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACA 48517
|| ||||| || | ||||| || || |||||
Sbjct 22821 ATTCCACCGGCACTCTTAGAGATCAGTGCACA 22790
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562018054560600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |