Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7056 116 4e-21 seq899 95.1 1e-14 >seq7056 Length=51435 Score = 116 bits (128), Expect = 4e-21 Identities = 198/287 (69%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365 || ||||||||||||||||| | || ||||| | | | || ||||| |||||||| ||| Sbjct 22470 ATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTACCGCCT 22529 Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425 || || | ||| | ||||| ||||| || |||| | ||| || | | ||||| ||| Sbjct 22530 TGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCATTGGAT 22589 Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCT 48485 | ||||| ||||||| ||| |||| ||||||| ||||| | | |||| Sbjct 22590 GTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGTTCAGACCT 22649 Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCT 48545 || ||||| || | || || || || ||||| | || | || || ||||| || | Sbjct 22650 ATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATGCCAGCA 22709 Query 48546 ATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 || ||| || |||| ||| || |||||| ||||| ||| || Sbjct 22710 ATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTGTGG 22756 >seq899 Length=82215 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCT 48365 || ||||||||||| ||||| | || ||||| | | | || ||||| |||||||| ||| Sbjct 23001 ATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCCT 22942 Query 48366 TGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGAT 48425 || || | || | ||||| ||||| || || | | ||| || | | ||||| ||| Sbjct 22941 TGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGAT 22882 Query 48426 ATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCT 48485 | ||||| ||||||| ||| | |||| | ||||| ||||| | | |||| Sbjct 22881 GTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGTTCAGACCT 22822 Query 48486 ATACCACCTGCCATTTTAGATATTAGAGCACA 48517 || ||||| || | ||||| || || ||||| Sbjct 22821 ATTCCACCGGCACTCTTAGAGATCAGTGCACA 22790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562018054560600