Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq8640 141 7e-28 seq9358 125 6e-23 seq8275 95.1 1e-13 seq7757 89.7 4e-12 seq8131 87.8 1e-11 >seq8640 Length=189999 Score = 141 bits (156), Expect = 7e-28 Identities = 435/662 (66%), Gaps = 18/662 (3%) Strand=Plus/Plus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 ||||| || ||||| | |||||||||||| | ||||| || | ||||||||| | Sbjct 72002 GCTCTGCGACGTCTTCGTACTGCTTGCGAACGTGCCAAGCGTACCCTTTCATCTTCGTCC 72061 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 || | | || ||| | |||||| | || ||||| || |||| | || ||| | Sbjct 72062 CAGGCTTCGATCGAAATTGATTCACTCTTCGAGGGTATCGATTTCTACACTAACATTACT 72121 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074 | ||| ||| || || | || ||||||| || | || || || || || || Sbjct 72122 CGTGCCCGATTCGAGGAGCTGTGCGCTGATCTTTTCCGTTCCACCATGGATCCTGTTGAG 72181 Query 552075 CAAGTTT-TAAGAGATTCAAAGATTGATAA-ATCCAAAGTACATGAAATTGTGCTTGTTG 552132 |||| | |||||| | ||||| || || | ||| | | ||||| || || ||||||| Sbjct 72182 -AAGTCGCTGAGAGATGCTAAGATGGACAAGAGCCAGA-TCCATGATATCGTTCTTGTTG 72239 Query 552133 GTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTAT---TTCAATGGTA 552189 | ||||| || | ||||| ||| | | | || || ||| || ||| ||| | Sbjct 72240 GAGGATCAACTCGTATTCCAAAAGTGCAGAAGCTGCTA---TCTGATCTGTTCTCTGGAA 72296 Query 552190 AAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCA 552247 || || | || |||| | || || ||||||||||||||||| || |||||| |||| Sbjct 72297 AAGAACTCAAC--AAGTCGATCAACCCTGATGAGGCTGTTGCCTACGGAGCCGCAGTTCA 72354 Query 552248 AGCAGCTATTCTTTCTG--GACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGAT 552305 ||| ||||||||||| | ||||| | || | || || | | ||| | ||| Sbjct 72355 AGCCGCTATTCTTTCCGGTGACAAGTCG--GAGGCTGTGCAGGATCTGCTCCTTCTCGAT 72412 Query 552306 GTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGAT 552365 || | |||||||| || ||| | ||||| | ||||||| | ||||| | | ||| | Sbjct 72413 GTGGCGCCTCTATCACTCGGTATCGAAACCGCTGGAGGTGTAATGACAGCTTTGATCAAG 72472 Query 552366 AGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAA 552425 || || || || ||||| || | | ||| | || || || || || || Sbjct 72473 AGGAACACCACCATTCCAACGAAGACCAGCCAGACATTCACCACCTACTCTGACAACCAG 72532 Query 552426 ACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAA 552485 ||| ||| || || | || ||||||||| | | | ||||| || || |||| | Sbjct 72533 CCTGGTGTGCTCATCCAGGTCTTCGAAGGAGAACGTGCAATGACTAAGGACAACAATCTA 72592 Query 552486 CTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAA 552545 ||||| | || | | || ||||| ||||| || | || |||||||||||||| Sbjct 72593 CTTGGAAAATTCGAGCTGTCTGGAATTCCACCTGCACCAAGAGGCGTACCGCAAATTGAG 72652 Query 552546 GT 552547 || Sbjct 72653 GT 72654 Score = 120 bits (132), Expect = 2e-21 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455 |||||| || | || |||||||| || || || ||||| |||||||||||||| ||||| Sbjct 71647 GGATGCTGTTGTCACAGTACCAGCGTACTTCAACGACTCTCAACGTCAAGCTACCAAAGA 71706 Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 ||| ||| |||||||| || ||||| |||||||| ||||| ||||| || |||||||| Sbjct 71707 TGCAGGAGCAATTGCTGGTCTCAATGTCCTTCGTATCATCAACGAACCCACCGCTGCTGC 71766 Query 550516 ACTTGCATATGGACTTGATAA 550536 | || || || || || || Sbjct 71767 TATCGCCTACGGTCTAGACAA 71787 >seq9358 Length=25477 Score = 125 bits (138), Expect = 6e-23 Identities = 122/157 (78%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 |||| | ||||| | | | || || | || |||||||| ||||| |||||| | || | Sbjct 19112 TTGGAAAGGAAGTGAAGCACGCGGTCGTGACGGTACCAGCTTATTTCAATGACGCTCAGC 19053 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 | || || || |||||||| ||| ||||||||| | || ||| ||||||| ||||||| Sbjct 19052 GACAGGCCACCAAAGATGCGGGAACGATTGCTGGATTAAACGTTGTTCGTATCATCAATG 18993 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||| ||||||||||| | |||||||| |||||||| Sbjct 18992 AACCAACTGCTGCTGCTATCGCATATGGGCTTGATAA 18956 >seq8275 Length=204344 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| || |||| || |||||||| |||||||||||||| || ||||| || | Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || || || ||||| | || | || ||| | ||||| |||||| ||||| || Sbjct 61130 TTCACATTTTCGATCGTATC-GGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAG 61072 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| || ||||| Sbjct 61071 AGTTTTCACGAAGATCTGCAT 61051 Score = 86.0 bits (94), Expect = 5e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| || || | |||||||| || || ||||||||||| || ||||| || | Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 60821 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || |||||||| || | | | || ||| | |||| |||||| ||||| || Sbjct 60820 TTGACGTTTTCAATTGTGTCCG-AAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAG 60762 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||| ||||| |||||||| Sbjct 60761 AGTTTTCACGAAGATTTGCAT 60741 >seq7757 Length=212262 Score = 89.7 bits (98), Expect = 4e-12 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369 ||||| ||| | || ||| | ||||| ||||||| || | ||||||||| ||| || Sbjct 115505 AAACAGTTTGCCCCCGAAGAGATTTCCGCTATGGTCTTGACGAAAATGAAGGAAATCGCT 115564 Query 550370 AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAAT 550429 | | | | || | ||||| | | | || || | || ||||| || || || || Sbjct 115565 GAATCCTATCTCGGCAAGGAAGTGAAGCACGCCGTTGTTACCGTACCGGCTTACTTCAAC 115624 Query 550430 GACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGT 550489 || | ||||||||||| || || || || ||| || ||||| | |||||| | || Sbjct 115625 GATGCTCAACGTCAAGCAACAAAGGACGCAGGAACGATCGCTGGTTTAAATGTTGTCCGA 115684 Query 550490 ATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||||| || || || ||||| || | || || || ||||| || Sbjct 115685 ATTATCAACGAGCCCACCGCTGCCGCTATCGCCTACGGTCTTGACAA 115731 >seq8131 Length=46037 Score = 87.8 bits (96), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 563322 TTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 563381 |||||| || || || || ||||||| ||||||||||| ||||||||||| ||||| Sbjct 31574 TTCAAGAAATTCACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATC 31633 Query 563382 TTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGT 563441 ||||| || || || ||| || ||||||| | | ||||| || | || Sbjct 31634 CTGAATCTTGGCCTTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGT 31693 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || |||||||| || ||||| |||||||| Sbjct 31694 TTTTCCCGTAAGAGTCTTTACGAAGATTTGCAT 31726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028612996553350