Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq8640 141 7e-28
seq9358 125 6e-23
seq8275 95.1 1e-13
seq7757 89.7 4e-12
seq8131 87.8 1e-11
>seq8640
Length=189999
Score = 141 bits (156), Expect = 7e-28
Identities = 435/662 (66%), Gaps = 18/662 (3%)
Strand=Plus/Plus
Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954
||||| || ||||| | |||||||||||| | ||||| || | ||||||||| |
Sbjct 72002 GCTCTGCGACGTCTTCGTACTGCTTGCGAACGTGCCAAGCGTACCCTTTCATCTTCGTCC 72061
Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014
|| | | || ||| | |||||| | || ||||| || |||| | || ||| |
Sbjct 72062 CAGGCTTCGATCGAAATTGATTCACTCTTCGAGGGTATCGATTTCTACACTAACATTACT 72121
Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAA 552074
| ||| ||| || || | || ||||||| || | || || || || || ||
Sbjct 72122 CGTGCCCGATTCGAGGAGCTGTGCGCTGATCTTTTCCGTTCCACCATGGATCCTGTTGAG 72181
Query 552075 CAAGTTT-TAAGAGATTCAAAGATTGATAA-ATCCAAAGTACATGAAATTGTGCTTGTTG 552132
|||| | |||||| | ||||| || || | ||| | | ||||| || || |||||||
Sbjct 72182 -AAGTCGCTGAGAGATGCTAAGATGGACAAGAGCCAGA-TCCATGATATCGTTCTTGTTG 72239
Query 552133 GTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTAT---TTCAATGGTA 552189
| ||||| || | ||||| ||| | | | || || ||| || ||| ||| |
Sbjct 72240 GAGGATCAACTCGTATTCCAAAAGTGCAGAAGCTGCTA---TCTGATCTGTTCTCTGGAA 72296
Query 552190 AAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCA 552247
|| || | || |||| | || || ||||||||||||||||| || |||||| ||||
Sbjct 72297 AAGAACTCAAC--AAGTCGATCAACCCTGATGAGGCTGTTGCCTACGGAGCCGCAGTTCA 72354
Query 552248 AGCAGCTATTCTTTCTG--GACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGAT 552305
||| ||||||||||| | ||||| | || | || || | | ||| | |||
Sbjct 72355 AGCCGCTATTCTTTCCGGTGACAAGTCG--GAGGCTGTGCAGGATCTGCTCCTTCTCGAT 72412
Query 552306 GTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGAT 552365
|| | |||||||| || ||| | ||||| | ||||||| | ||||| | | ||| |
Sbjct 72413 GTGGCGCCTCTATCACTCGGTATCGAAACCGCTGGAGGTGTAATGACAGCTTTGATCAAG 72472
Query 552366 AGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAA 552425
|| || || || ||||| || | | ||| | || || || || || ||
Sbjct 72473 AGGAACACCACCATTCCAACGAAGACCAGCCAGACATTCACCACCTACTCTGACAACCAG 72532
Query 552426 ACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAA 552485
||| ||| || || | || ||||||||| | | | ||||| || || |||| |
Sbjct 72533 CCTGGTGTGCTCATCCAGGTCTTCGAAGGAGAACGTGCAATGACTAAGGACAACAATCTA 72592
Query 552486 CTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAA 552545
||||| | || | | || ||||| ||||| || | || ||||||||||||||
Sbjct 72593 CTTGGAAAATTCGAGCTGTCTGGAATTCCACCTGCACCAAGAGGCGTACCGCAAATTGAG 72652
Query 552546 GT 552547
||
Sbjct 72653 GT 72654
Score = 120 bits (132), Expect = 2e-21
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 550396 GGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGA 550455
|||||| || | || |||||||| || || || ||||| |||||||||||||| |||||
Sbjct 71647 GGATGCTGTTGTCACAGTACCAGCGTACTTCAACGACTCTCAACGTCAAGCTACCAAAGA 71706
Query 550456 TGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515
||| ||| |||||||| || ||||| |||||||| ||||| ||||| || ||||||||
Sbjct 71707 TGCAGGAGCAATTGCTGGTCTCAATGTCCTTCGTATCATCAACGAACCCACCGCTGCTGC 71766
Query 550516 ACTTGCATATGGACTTGATAA 550536
| || || || || || ||
Sbjct 71767 TATCGCCTACGGTCTAGACAA 71787
>seq9358
Length=25477
Score = 125 bits (138), Expect = 6e-23
Identities = 122/157 (78%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439
|||| | ||||| | | | || || | || |||||||| ||||| |||||| | || |
Sbjct 19112 TTGGAAAGGAAGTGAAGCACGCGGTCGTGACGGTACCAGCTTATTTCAATGACGCTCAGC 19053
Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499
| || || || |||||||| ||| ||||||||| | || ||| ||||||| |||||||
Sbjct 19052 GACAGGCCACCAAAGATGCGGGAACGATTGCTGGATTAAACGTTGTTCGTATCATCAATG 18993
Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|||| ||||||||||| | |||||||| ||||||||
Sbjct 18992 AACCAACTGCTGCTGCTATCGCATATGGGCTTGATAA 18956
>seq8275
Length=204344
Score = 95.1 bits (104), Expect = 1e-13
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|||||||| || |||| || |||||||| |||||||||||||| || ||||| || |
Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || || || ||||| | || | || ||| | ||||| |||||| ||||| ||
Sbjct 61130 TTCACATTTTCGATCGTATC-GGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAG 61072
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|||||| ||||| || |||||
Sbjct 61071 AGTTTTCACGAAGATCTGCAT 61051
Score = 86.0 bits (94), Expect = 5e-11
Identities = 105/141 (74%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394
|||||||| || || | |||||||| || || ||||||||||| || ||||| || |
Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 60821
Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453
|| || |||||||| || | | | || ||| | |||| |||||| ||||| ||
Sbjct 60820 TTGACGTTTTCAATTGTGTCCG-AAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAG 60762
Query 563454 AGTTTTAACGAAAATTTGCAT 563474
|||||| ||||| ||||||||
Sbjct 60761 AGTTTTCACGAAGATTTGCAT 60741
>seq7757
Length=212262
Score = 89.7 bits (98), Expect = 4e-12
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 550310 AAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC 550369
||||| ||| | || ||| | ||||| ||||||| || | ||||||||| ||| ||
Sbjct 115505 AAACAGTTTGCCCCCGAAGAGATTTCCGCTATGGTCTTGACGAAAATGAAGGAAATCGCT 115564
Query 550370 AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAAT 550429
| | | | || | ||||| | | | || || | || ||||| || || || ||
Sbjct 115565 GAATCCTATCTCGGCAAGGAAGTGAAGCACGCCGTTGTTACCGTACCGGCTTACTTCAAC 115624
Query 550430 GACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGT 550489
|| | ||||||||||| || || || || ||| || ||||| | |||||| | ||
Sbjct 115625 GATGCTCAACGTCAAGCAACAAAGGACGCAGGAACGATCGCTGGTTTAAATGTTGTCCGA 115684
Query 550490 ATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536
|||||||| || || || ||||| || | || || || ||||| ||
Sbjct 115685 ATTATCAACGAGCCCACCGCTGCCGCTATCGCCTACGGTCTTGACAA 115731
>seq8131
Length=46037
Score = 87.8 bits (96), Expect = 1e-11
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 563322 TTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 563381
|||||| || || || || ||||||| ||||||||||| ||||||||||| |||||
Sbjct 31574 TTCAAGAAATTCACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATC 31633
Query 563382 TTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGT 563441
||||| || || || ||| || ||||||| | | ||||| || | ||
Sbjct 31634 CTGAATCTTGGCCTTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGT 31693
Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||| || |||||||| || ||||| ||||||||
Sbjct 31694 TTTTCCCGTAAGAGTCTTTACGAAGATTTGCAT 31726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028612996553350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |