Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq8275 109 4e-19 seq8587 93.3 3e-14 seq8832 89.7 4e-13 >seq8275 Length=204344 Score = 109 bits (120), Expect = 4e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| ||||| || | || || ||||| || ||||| ||||| ||||||||||| || Sbjct 59427 CTGACCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTT 59368 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 | ||| ||| |||| | |||||| || | ||| || || || |||| || || ||||| Sbjct 59367 TGCTTTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGT 59308 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 || ||||| ||||| ||||||||| Sbjct 59307 TAGGGTTTTCACAAAGATCTGCATG 59283 Score = 105 bits (116), Expect = 5e-18 Identities = 115/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||| ||||| || | ||||||||||| || ||||| |||||||| || ||||| || Sbjct 61191 ACCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 61132 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 ||| ||| |||| | || || || | |||||||| | ||| | ||||| || |||| Sbjct 61131 TTTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAG 61072 Query 101449 AGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481 |||||| || || ||||||||| | ||||||| Sbjct 61071 AGTTTTCACGAAGATCTGCATGCCTCCGCGAAG 61039 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 || ||| |||||||| | ||||| || || || ||||||||||| ||||||||||| || Sbjct 59721 CTGACCGGCAAATATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTT 59662 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| | || | ||||| || | || ||||| || |||| ||| || || || Sbjct 59661 GGCCTTCACATTCTCAATTGTGTCCGAGGCCTCGACTTCCAGGGTGATCGTCTTTCCAGT 59602 Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || |||||||| || ||||| | | |||||| Sbjct 59601 CAATGTCTTTACAAAGATTTGCATTCCTCCTCGAAGA 59565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||||||||| || | ||||| ||||| || ||||| ||||| ||||||||||| || Sbjct 60231 ACCTGCAAAGATAAGCCGCTGCTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTAGC 60172 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 || ||| |||| | || ||||| | || || || | || | ||| || || || || Sbjct 60171 CTTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAA 60112 Query 101449 AGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || ||||| |||||||| | | |||||| Sbjct 60111 CGTCTTCACAAAGATCTGCATTCCTCCTCGAAGA 60078 >seq8587 Length=192155 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| || || ||||||||||| ||||| || |||||||||||||| || || || || Sbjct 139988 CTTACCAGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATCTT 140047 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | ||||| || | || ||||| ||||||| || || || || Sbjct 140048 GGCCTTCACATTTTCAATGGTGTCGGAAGCCTCAACTTCGAGAGTGATTGTCTTTCCAGT 140107 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| || ||||| Sbjct 140108 AAGGGTCTTGACAAAGATTTGCAT 140131 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| ||||| ||||| || || || ||||| ||||| |||||||||||||| Sbjct 140585 TACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGG 140644 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 |||||| |||| | || || || | || ||||| ||||||| || || || || | Sbjct 140645 CCTTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAA 140704 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || || || || ||||| Sbjct 140705 GGGTCTTGACGAAGATTTGCAT 140726 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| ||||| || || ||||| || ||||| |||||||| || || || || Sbjct 141468 TACCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGG 141527 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || ||| |||| | || || || | ||| ||||||||||| | || || || || | Sbjct 141528 CCTTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAA 141587 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 ||| || ||||| |||||||| Sbjct 141588 GAGTCTTGACAAAGATCTGCAT 141609 >seq8832 Length=33236 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| || || ||||||||||| |||||||| |||||||||||||| || || || || Sbjct 22687 TACCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGG 22746 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || ||| |||| | || || || | || ||||| || |||| || ||||| || | Sbjct 22747 CCTTCACATTTTCAATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGA 22806 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || || || |||||||| Sbjct 22807 GGGTCTTGACGAAGATCTGCAT 22828 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| || || ||||| || || ||||| || ||||| ||||||||||| || || || Sbjct 22984 TACCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGG 23043 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 || || |||| | ||||| || | ||| |||||||| |||| || || || || | Sbjct 23044 CCTTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGA 23103 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || ||||| |||||||| Sbjct 23104 GGGTCTTGACAAAGATCTGCAT 23125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396216025160655