Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq8275 109 4e-19
seq8587 93.3 3e-14
seq8832 89.7 4e-13
>seq8275
Length=204344
Score = 109 bits (120), Expect = 4e-19
Identities = 111/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|| ||| ||||| || | || || ||||| || ||||| ||||| ||||||||||| ||
Sbjct 59427 CTGACCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTT 59368
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
| ||| ||| |||| | |||||| || | ||| || || || |||| || || |||||
Sbjct 59367 TGCTTTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGT 59308
Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470
|| ||||| ||||| |||||||||
Sbjct 59307 TAGGGTTTTCACAAAGATCTGCATG 59283
Score = 105 bits (116), Expect = 5e-18
Identities = 115/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388
||| ||||| || | ||||||||||| || ||||| |||||||| || ||||| ||
Sbjct 61191 ACCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 61132
Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448
||| ||| |||| | || || || | |||||||| | ||| | ||||| || ||||
Sbjct 61131 TTTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAG 61072
Query 101449 AGTTTTTACAAATATCTGCATGGTTACGCGAAG 101481
|||||| || || ||||||||| | |||||||
Sbjct 61071 AGTTTTCACGAAGATCTGCATGCCTCCGCGAAG 61039
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|| ||| |||||||| | ||||| || || || ||||||||||| ||||||||||| ||
Sbjct 59721 CTGACCGGCAAATATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTT 59662
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| | || | ||||| || | || ||||| || |||| ||| || || ||
Sbjct 59661 GGCCTTCACATTCTCAATTGTGTCCGAGGCCTCGACTTCCAGGGTGATCGTCTTTCCAGT 59602
Query 101446 TAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482
|| || |||||||| || ||||| | | ||||||
Sbjct 59601 CAATGTCTTTACAAAGATTTGCATTCCTCCTCGAAGA 59565
Score = 84.2 bits (92), Expect = 2e-11
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388
||||||||| || | ||||| ||||| || ||||| ||||| ||||||||||| ||
Sbjct 60231 ACCTGCAAAGATAAGCCGCTGCTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTAGC 60172
Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448
|| ||| |||| | || ||||| | || || || | || | ||| || || || ||
Sbjct 60171 CTTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAA 60112
Query 101449 AGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482
|| || ||||| |||||||| | | ||||||
Sbjct 60111 CGTCTTCACAAAGATCTGCATTCCTCCTCGAAGA 60078
>seq8587
Length=192155
Score = 93.3 bits (102), Expect = 3e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|||||| || || ||||||||||| ||||| || |||||||||||||| || || || ||
Sbjct 139988 CTTACCAGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATCTT 140047
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|| ||| |||| | ||||| || | || ||||| ||||||| || || || ||
Sbjct 140048 GGCCTTCACATTTTCAATGGTGTCGGAAGCCTCAACTTCGAGAGTGATTGTCTTTCCAGT 140107
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| || || ||||| || |||||
Sbjct 140108 AAGGGTCTTGACAAAGATTTGCAT 140131
Score = 89.7 bits (98), Expect = 4e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| ||||| ||||| || || || ||||| ||||| ||||||||||||||
Sbjct 140585 TACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGG 140644
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
|||||| |||| | || || || | || ||||| ||||||| || || || || |
Sbjct 140645 CCTTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAA 140704
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
|| || || || || |||||
Sbjct 140705 GGGTCTTGACGAAGATTTGCAT 140726
Score = 89.7 bits (98), Expect = 4e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| ||||| ||||| || || ||||| || ||||| |||||||| || || || ||
Sbjct 141468 TACCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGG 141527
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
|| ||| |||| | || || || | ||| ||||||||||| | || || || || |
Sbjct 141528 CCTTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAA 141587
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
||| || ||||| ||||||||
Sbjct 141588 GAGTCTTGACAAAGATCTGCAT 141609
>seq8832
Length=33236
Score = 89.7 bits (98), Expect = 4e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| || || ||||||||||| |||||||| |||||||||||||| || || || ||
Sbjct 22687 TACCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGG 22746
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
|| ||| |||| | || || || | || ||||| || |||| || ||||| || |
Sbjct 22747 CCTTCACATTTTCAATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGA 22806
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
|| || || || ||||||||
Sbjct 22807 GGGTCTTGACGAAGATCTGCAT 22828
Score = 86.0 bits (94), Expect = 5e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387
|||| || || ||||| || || ||||| || ||||| ||||||||||| || || ||
Sbjct 22984 TACCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGG 23043
Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447
|| || |||| | ||||| || | ||| |||||||| |||| || || || || |
Sbjct 23044 CCTTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGA 23103
Query 101448 AAGTTTTTACAAATATCTGCAT 101469
|| || ||||| ||||||||
Sbjct 23104 GGGTCTTGACAAAGATCTGCAT 23125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396216025160655
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |