Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq8587 96.9 3e-15 seq8275 87.8 1e-12 seq8832 84.2 2e-11 >seq8587 Length=192155 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| || || ||||||||||| ||||| | ||||| ||||||||||| |||||| Sbjct 141775 TACCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGG 141834 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 ||| ||| | | || || || || || || || | |||||| || ||||| |||| Sbjct 141835 CTTTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCA 141894 Query 48745 AAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| || ||||||||||| ||| Sbjct 141895 GAGTTTTGACGAAAATCTGCATAGTG 141920 >seq8275 Length=204344 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 48626 ACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTG 48685 ||||||||| || |||||||||||||| | |||| || || ||||| |||||| Sbjct 61191 ACCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 61132 Query 48686 TTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAA 48745 ||| ||| | | | || || |||||||| |||| ||||| |||||||| || | Sbjct 61131 TTTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAG 61072 Query 48746 AGTTTTTACAAAAATCTGCAT 48766 |||||| || || |||||||| Sbjct 61071 AGTTTTCACGAAGATCTGCAT 61051 >seq8832 Length=33236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| || || |||||||| || ||||| | ||||| ||||||||||| |||||| Sbjct 24476 TACCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGG 24535 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 ||| ||| | | | || || || || || || | ||||| || ||||| |||| Sbjct 24536 CTTTAACATTTTCAATGGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTCTTTCCTGTCA 24595 Query 48745 AAGTTTTTACAAAAATCTGCATCGTG 48770 |||||| || ||||||||||| ||| Sbjct 24596 GAGTTTTGACGAAAATCTGCATAGTG 24621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380877639826545