Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq9358 132 3e-25 seq7757 120 2e-21 seq8640 100 2e-15 seq8832 95.1 8e-14 seq8587 95.1 8e-14 seq8275 93.3 3e-13 seq8131 86.0 4e-11 >seq9358 Length=25477 Score = 132 bits (146), Expect = 3e-25 Identities = 171/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 474641 GAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAA 474700 ||||| || || || |||||||| | || ||| | ||||| | | ||||||||| | Sbjct 19188 GAAACCAAGCAGTTCACACCGGAAGAGATCTCTGCCATGGTCCTCGGAAAAATGAAAGAG 19129 Query 474701 ACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATAT 474760 | || || ||||||||| | ||||| | | || || | || || ||||| ||| Sbjct 19128 ATTGCTGAATCGTATCTTGGAAAGGAAGTGAAGCACGCGGTCGTGACGGTACCAGCTTAT 19069 Query 474761 TTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820 || ||||| |||| || || || || ||||||||||||| ||||| || | || ||| Sbjct 19068 TTCAATGACGCTCAGCGACAGGCCACCAAAGATGCGGGAACGATTGCTGGATTAAACGTT 19009 Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | ||||| || ||||||||||| || || || | || ||||| ||||||||||| Sbjct 19008 GTTCGTATCATCAATGAACCAACTGCTGCTGCTATCGCATATGGGCTTGATAAGAA 18953 >seq7757 Length=212262 Score = 120 bits (132), Expect = 2e-21 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 474641 GAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAA 474700 |||| ||||| ||| | || ||| | ||||| | ||||| || | |||||||| || Sbjct 115499 GAAATGAAACAGTTTGCCCCCGAAGAGATTTCCGCTATGGTCTTGACGAAAATGAAGGAA 115558 Query 474701 ACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATAT 474760 | ||| || ||||| || | ||||| | | || || |||| || || || || Sbjct 115559 ATCGCTGAATCCTATCTCGGCAAGGAAGTGAAGCACGCCGTTGTTACCGTACCGGCTTAC 115618 Query 474761 TTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820 || || ||| |||||||||||||||| || || || |||| || || ||| | |||||| Sbjct 115619 TTCAACGATGCTCAACGTCAAGCAACAAAGGACGCAGGAACGATCGCTGGTTTAAATGTT 115678 Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || ||||| || || || || || ||||| | || || |||||||| ||||| Sbjct 115679 GTCCGAATTATCAACGAGCCCACCGCTGCCGCTATCGCCTACGGTCTTGACAAGAA 115734 >seq8640 Length=189999 Score = 100 bits (110), Expect = 2e-15 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 474734 GATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGAT 474793 ||||| || | || || ||||| || || || || |||||||||||||| || |||||| Sbjct 71648 GATGCTGTTGTCACAGTACCAGCGTACTTCAACGACTCTCAACGTCAAGCTACCAAAGAT 71707 Query 474794 GCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCA 474853 || ||| |||||| ||||| ||||| | ||||| || || ||||| || || || || Sbjct 71708 GCAGGAGCAATTGCTGGTCTCAATGTCCTTCGTATCATCAACGAACCCACCGCTGCTGCT 71767 Query 474854 CTTGCTTATGGTCTTGATAAGAA 474876 | || || ||||| || ||||| Sbjct 71768 ATCGCCTACGGTCTAGACAAGAA 71790 >seq8832 Length=33236 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 |||||||| || | ||||| ||||| || ||||||||||||||||| || ||||| Sbjct 24170 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 24229 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||||||||| | | | ||| ||||| || || || || ||||| Sbjct 24230 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 24289 Query 480753 GTCTTAACGAAAATTTG 480769 ||||||||||| || || Sbjct 24290 GTCTTAACGAAGATCTG 24306 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || || || || || ||||| ||||| || |||||||| ||||||||||||||||| | Sbjct 24478 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 24537 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| || |||| | |||||| |||||||| || || || ||| Sbjct 24538 TTAACATTTTCAATGGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTCTTTCCTGTCAGA 24597 Query 480753 GTCTTAACGAAAATTTG 480769 || || |||||||| || Sbjct 24598 GTTTTGACGAAAATCTG 24614 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||| || || || || || ||||| || ||||||||||||||||| || ||||| Sbjct 23876 CCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 23935 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||||||||| | | | ||| ||||| || || || || ||||| Sbjct 23936 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 23995 Query 480753 GTCTTAACGAAAATTTG 480769 ||||||||||| || || Sbjct 23996 GTCTTAACGAAGATCTG 24012 >seq8587 Length=192155 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || || || || || || || ||||| || |||||||| ||||||||||||||||| | Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 141836 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| ||||||||| |||| | |||||| |||||||| || || || ||| Sbjct 141837 TTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCAGA 141896 Query 480753 GTCTTAACGAAAATTTG 480769 || || |||||||| || Sbjct 141897 GTTTTGACGAAAATCTG 141913 >seq8275 Length=204344 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || ||||| || || || ||||||||||| ||||||||||| ||||| |||||||| | Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 || ||| ||| || ||||| | || | | || ||| ||||||||||| || || || Sbjct 61130 TTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAA-AGTAATAGTTTTTCCAGTTAG 61072 Query 480752 AGTCTTAACGAAAATTTG 480769 ||| || ||||| || || Sbjct 61071 AGTTTTCACGAAGATCTG 61054 Score = 89.7 bits (98), Expect = 3e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || ||||| ||||| ||||| ||||| || |||||||||||||| |||||||||||| | Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGCT 59364 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| ||||||||| || | | | | || || || || || || ||||| || Sbjct 59363 TTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 59304 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 59303 GTTTTCACAAAGATCTG 59287 >seq8131 Length=46037 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || || || ||||| || || |||||||| |||||||||||||| || |||||||| Sbjct 31587 CCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTGGCC 31646 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| || || ||||||| | | || ||||| || ||||| || || ||| Sbjct 31647 TTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGA 31706 Query 480753 GTCTTAACGAAAATTTG 480769 ||||| ||||| ||||| Sbjct 31707 GTCTTTACGAAGATTTG 31723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267625212986420