Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq8640 342 7e-89 seq8275 156 6e-33 seq8716 154 2e-32 seq8131 154 2e-32 seq8587 141 1e-28 seq7757 138 1e-27 seq8832 134 2e-26 seq9358 100 4e-16 seq899 91.5 2e-13 seq7056 87.8 2e-12 >seq8640 Length=189999 Score = 342 bits (378), Expect = 7e-89 Identities = 693/1012 (68%), Gaps = 20/1012 (2%) Strand=Plus/Plus Query 195707 GATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGAC 195766 ||||| ||||| || ||||| || ||||||| || || ||||| || || || || || Sbjct 71648 GATGCTGTTGTCACAGTACCAGCGTACTTCAACGACTCTCAACGTCAAGCTACCAAAGAT 71707 Query 195767 GCTGCTGCTATTGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGC 195825 || | || ||||| ||||| || |||| || | || ||||| ||||| || || ||||| Sbjct 71708 GCAGGAGCAATTGCTGGTCTCAA-TGTCCTTCGTATCATCAACGAACCCACCGCTGCTGC 71766 Query 195826 AATTGCTTATGGTCTGGACAAGAACAAGGA--CGAAGATAAAAATGTATTGATCTTTGAT 195883 || || || ||||| |||||||| ||| || || ||| || | || || ||| Sbjct 71767 TATCGCCTACGGTCTAGACAAGAAG--GGAACCGGCGAGCGAAACGTGCTCATTTTCGAT 71824 Query 195884 CTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTA 195943 || || || ||||| || ||||| || | || | ||||| | ||| || || ||||| Sbjct 71825 CTTGGAGGCGGTACCTTCGATGTGTCGATCCTTACCATTGAGGATGGAATCTTTGAAGTG 71884 Query 195944 AAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGT 196003 || |||| ||||| || || || || || || || || || || ||| | | Sbjct 71885 AAATCTACAGCTGGAGACACCCACCTTGGAGGAGAGGACTTTGACAACCGTATGGTGAAC 71944 Query 196004 CATTT-GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGC 196062 || || ||| | ||| ||| | ||| | ||||| ||| | |||||| | || Sbjct 71945 CACTTCGTC-GCTGAATTCAAGAGGAAGCACAAGAAGGATCTCAACACCAATCCTCGTGC 72003 Query 196063 TCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCA 196122 ||| || || ||| | ||||| || ||||||||||| || || || || ||| || | || Sbjct 72004 TCTGCGACGTCTTCGTACTGCTTGCGAACGTGCCAAGCGTACCCTTTCATCTTCGTCCCA 72063 Query 196123 AACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCG 196182 | | | || |||||||| | || || || || || ||||| || | ||||| || Sbjct 72064 GGCTTCGATCGAAATTGATTCACTCTTCGAGGGTATCGATTTCTACACTAACATTACTCG 72123 Query 196183 TGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACA 196242 ||| || || || ||| | | ||||| | || | ||||| |||||||| | Sbjct 72124 TGCCCGATTCGAGGAGCTGTGCGCTGATCTTTTCCGTTCCACCATGGATCCTGTTGAG-A 72182 Query 196243 AGTA-CTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAG 196301 ||| || | || || |||||||| ||| || | |||| || || ||||| |||| Sbjct 72183 AGTCGCTGAGAGATGCTAAGATGGACAAGAGCCAGATCCATGATATCGTTCTTGTTGGAG 72242 Query 196302 GATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATT 196361 ||||||| |||||||| || | || || |||| ||| | ||| | ||||| Sbjct 72243 GATCAACTCGTATTCCAAAAGTGCAGAAGCTGCTATCTGATCTGTTCTCTGGAAAAGAAC 72302 Query 196362 TAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTA 196421 | ||||| |||||||||| ||||| || ||||| || || || || ||||| || |||| Sbjct 72303 TCAACAAGTCGATCAACCCTGATGAGGCTGTTGCCTACGGAGCCGCAGTTCAAGCCGCTA 72362 Query 196422 TTCTCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCAC 196478 |||| || || |||||| | || || ||||| || || || ||||| || | Sbjct 72363 TTCTTTCCGG---TGACAAGTCGGAGGCTGTGCAGGATCTGCTCCTTCTCGATGTGGCGC 72419 Query 196479 CCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACA 196538 | |||| || ||| | ||||| || || ||||| ||||| | || | ||||||| Sbjct 72420 CTCTATCACTCGGTATCGAAACCGCTGGAGGTGTAATGACAGCTTTGATCAAGAGGAACA 72479 Query 196539 CAACTATTCCGACTAAGAAGGAACAAGTC-TTTTCAACGTATTCCGATAATCAACCAGGT 196597 | || ||||| || ||| | | | || | || | || || || || || || || ||| Sbjct 72480 CCACCATTCCAACGAAG-ACCAGCCAGACATTCACCACCTACTCTGACAACCAGCCTGGT 72538 Query 196598 GTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGG 196656 || | || || || | ||||||||||| | | || | ||||| ||| |||||||||| Sbjct 72539 GTGCTCATCCAGGTCTTCGAAGGAGAACG-TGCAATGACTAAGGACAACAATCTACTTGG 72597 Query 196657 AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATT 196708 || ||||| || | || |||||| ||||||| ||||| || || || ||| Sbjct 72598 AAAATTCGAGCTGTCTGGAATTCCACCTGCACCAAGAGGCGTACCGCAAATT 72649 >seq8275 Length=204344 Score = 156 bits (172), Expect = 6e-33 Identities = 121/144 (84%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171859 AGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCG 171918 || ||||| ||||||||||||||||| || || || || ||||| ||||||||||| | Sbjct 59281 AGCATGCAGATCTTTGTGAAAACCCTAACCGGGAAGACAATCACACTCGAGGTTGAAGCC 59340 Query 171919 TCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGAT 171978 || ||||| || || || | ||||| |||||||||||||||||||| |||||||| ||| Sbjct 59341 TCCGACACTATTGAAAATGTGAAAGCAAAGATTCAAGATAAGGAAGGAATTCCACCGGAT 59400 Query 171979 CAGCAACGACTTATTTTTGCTGGT 172002 |||||||||||||| ||||| ||| Sbjct 59401 CAGCAACGACTTATCTTTGCCGGT 59424 Score = 141 bits (156), Expect = 1e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || || | |||||||| || |||||||| || || ||| | || Sbjct 59578 ATGCAAATCTTTGTAAAGACATTGACTGGAAAGACGATCACCCTGGAAGTCGAGGCCTCG 59637 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || |||||||||||||||||||||||||||||||| || ||| Sbjct 59638 GACACAATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAAGGCATTCCACCAGACCAG 59697 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || ||||| || ||||| ||| Sbjct 59698 CAGCGACTCATATTTGCCGGT 59718 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||||||||| || | || ||||| || || || | ||||||||| | || Sbjct 60091 ATGCAGATCTTTGTGAAGACGTTGACAGGAAAGACGATTACATTGGAGGTTGAGGCATCT 60150 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || |||||||| || |||| || |||||||||||||||||||| |||||||| |||||| Sbjct 60151 GATACAATCGAAAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCACCTGATCAG 60210 Query 171982 CAACGACTTATTTTTGCTGGTAAA 172005 || || ||||| ||||| ||| || Sbjct 60211 CAGCGGCTTATCTTTGCAGGTGAA 60234 Score = 129 bits (142), Expect = 8e-25 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| |||||||| || |||||||||||||| || | || || || | || Sbjct 60741 ATGCAAATCTTCGTGAAAACTCTGACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCG 60800 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || ||| |||||||||||||||| || || ||||| || || || |||||| Sbjct 60801 GACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 60860 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || || || || ||||| ||| Sbjct 60861 CAGCGGCTCATCTTTGCCGGT 60881 Score = 120 bits (132), Expect = 4e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| |||||||| || |||||||||||||| || | || || ||| | || Sbjct 61051 ATGCAGATCTTCGTGAAAACTCTAACTGGAAAAACTATTACTTTGGAAGTGGAGGCATCC 61110 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | ||||| |||||||| || || ||||| |||||||| ||||| Sbjct 61111 GATACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 61170 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || ||||| || ||||| ||| Sbjct 61171 CAGCGACTCATCTTTGCCGGT 61191 >seq8716 Length=186993 Score = 154 bits (170), Expect = 2e-32 Identities = 135/167 (81%), Gaps = 1/167 (1%) Strand=Plus/Minus Query 171841 TAAATGTAATATACTAGTAGTA-TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTAT 171899 ||| ||| ||| | |||||| |||||||||| || || || ||||| ||||||||||| Sbjct 74677 TAATTGTCCTATTTTTGTAGTAATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACTAT 74618 Query 171900 CACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAA 171959 |||||| ||||||||| | || || || ||||| || | || ||||||||||| ||||| Sbjct 74617 CACCCTGGAGGTTGAGGCCTCCGATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAA 74558 Query 171960 GGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAAC 172006 |||||| || || || |||||||| |||||||| || || ||||||| Sbjct 74557 GGAAGGAATCCCGCCTGATCAGCAGCGACTTATCTTCGCAGGTAAAC 74511 >seq8131 Length=46037 Score = 154 bits (170), Expect = 2e-32 Identities = 140/175 (80%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 171841 TAAATGTAATATACTAGTAGTA-TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTAT 171899 ||| ||| ||| | |||||| |||||||||| || || || ||||| |||||||| || Sbjct 31748 TAATTGTTCTATTTTTGTAGTAATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACCAT 31689 Query 171900 CACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAA 171959 |||||||||||||||| | || || || ||||| || | || ||||||||||| ||||| Sbjct 31688 CACCCTCGAGGTTGAGGCCTCTGATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAA 31629 Query 171960 GGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAA 172014 |||||| ||||| || |||||||| |||||||| || || ||| || |||||| Sbjct 31628 GGAAGGAATTCCGCCTGATCAGCAGCGACTTATCTTCGCAGGTGAATTTCTTGAA 31574 >seq8587 Length=192155 Score = 141 bits (156), Expect = 1e-28 Identities = 116/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| ||||| || || ||||||||||| |||||| | || Sbjct 139832 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTCT 139773 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| | ||||||||||||||||| |||||||| ||||| || || ||| Sbjct 139772 GATACCATCGAGAACGTGAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCGGACCAG 139713 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || ||||| || ||||||||| Sbjct 139712 CAGCGACTGATCTTTGCTGGT 139692 Score = 140 bits (154), Expect = 4e-28 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || |||||||||||||| || ||||| ||||| |||||| | || Sbjct 140726 ATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACAATCACTCTCGAAGTTGAGGCATCC 140667 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || ||||| ||||||||||||||||| ||||| || || ||| Sbjct 140666 GATACCATCGAAAATGTAAAGGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGACCAG 140607 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || ||| | || |||||||||| Sbjct 140606 CAGCGATTGATCTTTGCTGGTA 140585 Score = 132 bits (146), Expect = 6e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || |||||||||||||| || ||||| ||||| |||||| | || Sbjct 140131 ATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTCTCGAAGTTGAGGCTTCC 140072 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || |||||||| || || || ||||||||||| || |||||| Sbjct 140071 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 140012 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || || | || || |||||||| Sbjct 140011 CAGCGTTTGATCTTCGCTGGTAA 139989 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || ||||||||||| ||||| || || || || || | ||| Sbjct 141609 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACTATTACTCTTGAAGTCGAAGCCTCA 141550 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || |||| |||||||| || || || ||||| ||||| || |||||| Sbjct 141549 GATACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCCCCAGATCAG 141490 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||| | || |||||||||| Sbjct 141489 CAACGATTGATCTTTGCTGGTA 141468 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| ||||| |||||||| || || |||||||| || || | || Sbjct 140428 ATGCAGATATTCGTGAAGACCCTCACTGGAAAGACAATTACCCTCGAAGTCGAAGCTTCG 140369 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || ||| |||| |||||||| || ||||| ||||| ||||| || |||||| Sbjct 140368 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGATCAG 140309 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||| | || || || |||| Sbjct 140308 CAACGATTGATCTTCGCAGGTA 140287 Score = 109 bits (120), Expect = 7e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || || ||||| || || ||||| ||||| || || || || || | || Sbjct 141917 TATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACTATTACGCTTGAAGTCGAAGCTTC 141858 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| || || || | ||||||||||||||||| ||||| || ||||| || ||||| Sbjct 141857 TGACACTATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCA 141798 Query 171981 GCAACGACTTATTTTTGCTGGTA 172003 ||| ||||| || || || |||| Sbjct 141797 GCAGCGACTGATCTTCGCAGGTA 141775 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || |||||||||||||| || || ||||| || || || | || Sbjct 141021 ATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATTACCCTTGAAGTCGAAGCTTCG 140962 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || ||| |||| || || ||||| || ||||| || ||||| || || ||| Sbjct 140961 GATACCATTGAGAACGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCCCCAGACCAG 140902 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || ||| | || || || |||| Sbjct 140901 CAGCGATTGATCTTCGCAGGTA 140880 >seq7757 Length=212262 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 195619 GAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGC 195678 |||||| ||||| |||||||| ||||| ||||||| |||| || |||||||| | || Sbjct 115504 GAAACAGTTTGCCCCCGAAGAGATTTCCGCTATGGTCTTGACGAAAATGAAGGAAATCGC 115563 Query 195679 GGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAG 195738 ||||| | | || || ||||| | || ||||| || ||||| |||||||||| Sbjct 115564 TGAATCCTATCTCGGCAAGGAAGTGAAGCACGCCGTTGTTACCGTACCGGCTTACTTCAA 115623 Query 195739 TGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAG 195798 ||| | ||||| || || ||||||||||| | | || || ||| |||| | | | Sbjct 115624 CGATGCTCAACGTCAAGCAACAAAGGACGCAGGAACGATCGCTGGTTTAAATGTTGTCCG 115683 Query 195799 AATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 ||||||||| || || || || || || || || || ||||| |||||||| Sbjct 115684 AATTATCAACGAGCCCACCGCTGCCGCTATCGCCTACGGTCTTGACAAGAA 115734 >seq8832 Length=33236 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| |||||||| || |||||||| || || || | || Sbjct 23125 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAAGTCGAAGCTTCG 23066 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| |||||||| || ||||| ||||| ||||| || |||||| Sbjct 23065 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGATCAG 23006 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||| | || || ||||||| Sbjct 23005 CAACGATTGATCTTCGCTGGTA 22984 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || || ||||||||||| || ||||| ||||| ||||| | || Sbjct 23426 ATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACGATCACTCTCGAAGTTGAAGCATCC 23367 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || ||||| ||||| ||||||||||| |||||||| || ||| Sbjct 23366 GATACCATCGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGAATTCCACCAGACCAG 23307 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || ||| | || |||||||||| Sbjct 23306 CAGCGATTGATCTTTGCTGGTA 23285 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| |||||||| || ||||||||||| || || | || Sbjct 22533 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTCC 22474 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| | || |||||||| || || |||||||| ||||| || || ||| Sbjct 22473 GATACCATCGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 22414 Query 171982 CAACGACTTATTTTTGCTGGT 172002 || ||||| || ||||||||| Sbjct 22413 CAGCGACTCATCTTTGCTGGT 22393 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| |||||||| || ||||||||||| || || | || Sbjct 24309 ATGCAGATCTTCGTTAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCG 24250 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || |||||||| || || |||||||| ||||| || |||||| Sbjct 24249 GATACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 24190 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 |||||| | || |||||||||| Sbjct 24189 CAACGATTGATCTTTGCTGGTA 24168 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| ||||| || || ||||||||||| |||||| | || Sbjct 22828 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTCC 22769 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || |||||||| || || || ||||||||||| ||||||||| Sbjct 22768 GATACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGATCAG 22709 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || | || || ||||||| Sbjct 22708 CAGCGTTTGATCTTCGCTGGTA 22687 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| ||||| || || ||||||||||| |||||| | || Sbjct 23722 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTCC 23663 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| |||| ||||||||||| || || || || ||||| || || ||| Sbjct 23662 GATACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAAGAGGGGATTCCCCCAGACCAG 23603 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || ||| | || || || |||| Sbjct 23602 CAGCGATTGATCTTCGCAGGTA 23581 Score = 116 bits (128), Expect = 5e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| |||||||| || ||||||||||| || || | || Sbjct 24015 ATGCAGATCTTCGTTAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCG 23956 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || |||||||| || || |||||||| ||||| || |||||| Sbjct 23955 GATACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 23896 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || ||||| || || ||||||| Sbjct 23895 CAGCGACTGATCTTCGCTGGTA 23874 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || || ||||| || || ||||| ||||| || || || || || | || Sbjct 24618 TATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACTATTACACTTGAAGTCGAAGCTTC 24559 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| || || || | ||||||||||||||||| ||||| || ||||| || ||||| Sbjct 24558 TGACACCATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCA 24499 Query 171981 GCAACGACTTATTTTTGCTGGTA 172003 ||||||||| || || || |||| Sbjct 24498 GCAACGACTGATCTTCGCAGGTA 24476 >seq9358 Length=25477 Score = 100 bits (110), Expect = 4e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 || ||||| |||| ||| ||||| | | || || ||||| | || || ||||| Sbjct 19140 AAAATGAAAGAGATTGCTGAATCGTATCTTGGAAAGGAAGTGAAGCACGCGGTCGTGACG 19081 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 ||||| ||||| |||| ||| | || |||||||| || || || || | | ||||| Sbjct 19080 GTACCAGCTTATTTCAATGACGCTCAGCGACAGGCCACCAAAGATGCGGGAACGATTGCT 19021 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || ||||| | || | || |||||||||||||| || ||||| || || ||||| || Sbjct 19020 GGATTAAACGTTGTTCGTATCATCAATGAACCAACTGCTGCTGCTATCGCATATGGGCTT 18961 Query 195842 GACAAGAA 195849 || ||||| Sbjct 18960 GATAAGAA 18953 >seq899 Length=82215 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/284 (67%), Gaps = 3/284 (1%) Strand=Plus/Plus Query 78089 CCACAGATGTCATCTTGTTTCCTACTTGCAAATAAGGAGGACTCTATTAATGGTATATAC 78148 |||||| | || ||||||||||| || ||| | ||||| || ||| ||| || ||| Sbjct 22715 CCACAGCTCTCCTCTTGTTTCCTTCTGACAATGAGCGAGGATTCCATTGCTGGCATCTAC 22774 Query 78149 GGGACTCTCACAGAGTGTGCTCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATT 78208 | ||| | | | ||||| | ||| |||||| | || ||||| |||||||| | | Sbjct 22775 GACACTTTGAAGCAATGTGCACTGATCTCTAAGAGTGCCGGTGGAATAGGTCTGAACGTG 22834 Query 78209 CACGATGTTCGTGCAAACAAGTCCAGGATTAGAGGAACTAATGGTCAGTCTGATGGAATT 78268 ||| || | | |||| || |||| ||||| ||||| ||| |||| | Sbjct 22835 CACAATATCAGAGCAACTGGATCTCTGATTGCGGGAACAAATGGCACATCTAATGGCTTG 22894 Query 78269 ATTCCTATGCTTAGGGTATTCAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTA-- 78326 ||||| |||||| | |||| ||| || ||||| || || |||||| ||| || Sbjct 22895 ATTCCGATGCTTCGTGTATACAACAACACTGCACGTTACGTGGACCAAGGCGGTAATAAG 22954 Query 78327 -GGAAGGGGTCATTCGCTATGTACCTTGAACCTTGGCACGCCGA 78369 | ||| |||| || || ||||| ||||| ||||| || || Sbjct 22955 CGACCGGGAGCATTTGCAATCTACCTGGAACCGTGGCATGCTGA 22998 >seq7056 Length=51435 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/284 (67%), Gaps = 3/284 (1%) Strand=Plus/Minus Query 78089 CCACAGATGTCATCTTGTTTCCTACTTGCAAATAAGGAGGACTCTATTAATGGTATATAC 78148 ||||| |||| ||||||||||| || ||| | ||||| || ||| ||| || ||| Sbjct 22756 CCACAACTGTCTTCTTGTTTCCTCCTAACAATGAGCGAGGATTCGATTGCTGGCATTTAC 22697 Query 78149 GGGACTCTCACAGAGTGTGCTCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATT 78208 | ||| | | | ||||| | ||| || ||| | || ||||| |||||||| | | Sbjct 22696 GACACTTTGAAGCAATGTGCCCTGATCTCCAAGAGTGCCGGTGGAATAGGTCTGAACGTG 22637 Query 78209 CACGATGTTCGTGCAAACAAGTCCAGGATTAGAGGAACTAATGGTCAGTCTGATGGAATT 78268 ||| || | | || | || |||| ||||| ||||| || |||| | Sbjct 22636 CACAATATCAGAGCTACTGGATCGCTGATTGCGGGAACAAATGGCACATCCAATGGCTTG 22577 Query 78269 ATTCCTATGCTTAGGGTATTCAATGCTACAGCACGCTATGTCAACCAAGCGGGTCGTA-- 78326 ||||| |||||| | |||| ||| || ||||| ||||| |||||| ||| || Sbjct 22576 ATTCCGATGCTTCGAGTATACAACAACACTGCACGTTATGTGGACCAAGGCGGTAATAAG 22517 Query 78327 -GGAAGGGGTCATTCGCTATGTACCTTGAACCTTGGCACGCCGA 78369 | ||| ||||||| || ||||| ||||| ||||| || || Sbjct 22516 CGACCGGGAGCATTCGCAATCTACCTGGAACCATGGCATGCTGA 22473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657756196338800