Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq8275 96.9 5e-15
seq8587 87.8 3e-12
>seq8275
Length=204344
Score = 96.9 bits (106), Expect = 5e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | ||||| |||||||||||||||||||||| ||||| |||| |||
Sbjct 60741 ATGCAAATCTTCGTGAAAACTCTGACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCG 60800
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| |||||| ||| || || || || |||||||| || || ||||| ||
Sbjct 60801 GACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 60860
Query 155943 CAAAGATTGATTTATGCCGGT 155963
|| | | || | |||||||
Sbjct 60861 CAGCGGCTCATCTTTGCCGGT 60881
Score = 86.0 bits (94), Expect = 9e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| | || |||||||||||||| || || || | |||||||| | ||
Sbjct 59577 AATGCAAATCTTTGTAAAGACATTGACTGGAAAGACGATCACCCTGGAAGTCGAGGCCTC 59636
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| || ||||| || || |||||||| |||||||| || ||||| ||
Sbjct 59637 GGACACAATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAAGGCATTCCACCAGACCA 59696
Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966
|| || | || | ||||||| ||
Sbjct 59697 GCAGCGACTCATATTTGCCGGTCAG 59721
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || || | ||||| | ||||||||||||||||| || ||||| || | ||
Sbjct 61051 ATGCAGATCTTCGTGAAAACTCTAACTGGAAAAACTATTACTTTGGAAGTGGAGGCATCC 61110
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || ||| |||||| ||| || || || |||||||| || || || || |||
Sbjct 61111 GATACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 61170
Query 155943 CAAAGATTGATTTATGCCGGT 155963
|| || | || | |||||||
Sbjct 61171 CAGCGACTCATCTTTGCCGGT 61191
>seq8587
Length=192155
Score = 87.8 bits (96), Expect = 3e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| ||||| | || || | |||||||| || ||||| | |||||||||| |||
Sbjct 140429 AATGCAGATATTCGTGAAGACCCTCACTGGAAAGACAATTACCCTCGAAGTCGAAGCTTC 140370
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| |||||| || || || || ||||||||||| || || ||||| ||
Sbjct 140369 GGACACCATTGAAAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGATCA 140310
Query 155942 ACAAAGATTGATTTATGCCGGTA 155964
||| ||||||| | || ||||
Sbjct 140309 GCAACGATTGATCTTCGCAGGTA 140287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731753848414000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |