Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq8275 96.9 5e-15 seq8587 87.8 3e-12 >seq8275 Length=204344 Score = 96.9 bits (106), Expect = 5e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||| |||||||||||||||||||||| ||||| |||| ||| Sbjct 60741 ATGCAAATCTTCGTGAAAACTCTGACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCG 60800 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| || || || || |||||||| || || ||||| || Sbjct 60801 GACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 60860 Query 155943 CAAAGATTGATTTATGCCGGT 155963 || | | || | ||||||| Sbjct 60861 CAGCGGCTCATCTTTGCCGGT 60881 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || |||||||||||||| || || || | |||||||| | || Sbjct 59577 AATGCAAATCTTTGTAAAGACATTGACTGGAAAGACGATCACCCTGGAAGTCGAGGCCTC 59636 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || ||||| || || |||||||| |||||||| || ||||| || Sbjct 59637 GGACACAATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAAGGCATTCCACCAGACCA 59696 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 || || | || | ||||||| || Sbjct 59697 GCAGCGACTCATATTTGCCGGTCAG 59721 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | ||||||||||||||||| || ||||| || | || Sbjct 61051 ATGCAGATCTTCGTGAAAACTCTAACTGGAAAAACTATTACTTTGGAAGTGGAGGCATCC 61110 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| |||||| ||| || || || |||||||| || || || || ||| Sbjct 61111 GATACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 61170 Query 155943 CAAAGATTGATTTATGCCGGT 155963 || || | || | ||||||| Sbjct 61171 CAGCGACTCATCTTTGCCGGT 61191 >seq8587 Length=192155 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| ||||| | || || | |||||||| || ||||| | |||||||||| ||| Sbjct 140429 AATGCAGATATTCGTGAAGACCCTCACTGGAAAGACAATTACCCTCGAAGTCGAAGCTTC 140370 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||| || || || || ||||||||||| || || ||||| || Sbjct 140369 GGACACCATTGAAAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGATCA 140310 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| ||||||| | || |||| Sbjct 140309 GCAACGATTGATCTTCGCAGGTA 140287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731753848414000