Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq8275 105 1e-17 seq8832 91.5 3e-13 seq8587 91.5 3e-13 >seq8275 Length=204344 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 192396 ACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 192455 ||| |||||||| | || ||||||||||||||| ||||||||||| || || || ||| Sbjct 61191 ACCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGC 61132 Query 192456 TTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 ||| ||||| || | ||| || | || ||||| | |||||| ||||| ||||||| Sbjct 61131 TTTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAG 61072 Query 192516 TGTTTTAATAAATATCTGCAT 192536 ||||| | || |||||||| Sbjct 61071 AGTTTTCACGAAGATCTGCAT 61051 >seq8832 Length=33236 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 ||||||||||||| |||| ||| || || ||||| |||||||| ||||| || ||||| Sbjct 23285 TACCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGG 23344 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||| || | ||| || | ||| ||||| ||||| || || || ||||| | Sbjct 23345 CCTTTACATTTTCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAA 23404 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || || | || || |||||| Sbjct 23405 GAGTCTTGACGAAGATTTGCATT 23427 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 ||||||||||||| |||| || ||||| || || |||||||| || || || || || Sbjct 24168 TACCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGG 24227 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || ||||| |||| ||| || | ||| ||||| || || ||||| || ||||| | Sbjct 24228 CCTTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGA 24287 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || |||| || ||||||||| Sbjct 24288 GGGTCTTAACGAAGATCTGCATT 24310 >seq8587 Length=192155 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 ||||||||||||| |||| || ||||| || || || |||||||| || || || || Sbjct 141468 TACCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGG 141527 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || ||||| || | |||||| | ||| ||||| |||||||| || || ||||| | Sbjct 141528 CCTTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAA 141587 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || || | ||| ||||||||| Sbjct 141588 GAGTCTTGACAAAGATCTGCATT 141610 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 ||||||||||||| |||| ||| || || || || |||||||| |||||||| ||||| Sbjct 140585 TACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGG 140644 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 |||||||| || | ||| || | || ||||| ||||| || || || ||||| | Sbjct 140645 CCTTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAA 140704 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || || | || || |||||| Sbjct 140705 GGGTCTTGACGAAGATTTGCATT 140727 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 192395 TACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 192454 |||| || ||||| |||||||| ||||| || || |||||||| || || || || || Sbjct 141176 TACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGG 141235 Query 192455 TTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 192514 || || || || | ||| || | ||| ||||| ||||||||||| || ||||| | Sbjct 141236 CCTTCACGTTTTCAATCGTATCCGAGGCTTCGACTTCGAGAGTAATGGTCTTTCCAGTGA 141295 Query 192515 ATGTTTTAATAAATATCTGCATT 192537 || || | ||| ||||||||| Sbjct 141296 GGGTCTTGACAAAGATCTGCATT 141318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984317094710250