Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq9643 93.3 1e-13 >seq9643 Length=160280 Score = 93.3 bits (102), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||||| | || ||||| ||||| || ||| | ||| ||||| || ||| Sbjct 8766 TCCATAGCTTTGATCAGCCGTCGCTGGATATATCCGGTTTCGGCTGTCTTTACGGCGGTA 8707 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||| ||||||||||||||||| | ||| | ||| || || Sbjct 8706 TCGATAAGACCTTCACGACCTCCCATAGCATGGAAGAAGAACTCGGCTGGTGTTAAACCA 8647 Query 302695 CCAATAAAGGAGCTCTCAACGAAACC 302720 ||| | ||||| ||||||| ||||| Sbjct 8646 GCAAGATAGGAGTTCTCAAC-AAACC 8622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471574053282355