Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11486 104 3e-16 >seq11486 Length=118578 Score = 104 bits (114), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || |||||| | ||||||| |||||| | | || || || | Sbjct 96495 AGAAGCGCACTGATGACATCCCCAGTTGGGACATGGAGTTCTTGAAAGTTGATCAAGGAA 96554 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | | ||||| ||||||| || || || |||||||||||||| |||||| ||| | | Sbjct 96555 CTTTGTTTGAACTGATCCTTGCGGCAAATTACCTCGACATCAAAGGTCTGCTTGATGTCG 96614 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| | || |||||||||||||| || ||| | || || || || || || | Sbjct 96615 CCTGCAAAACGGTTGCCAACATGATCAAAGGGAAGACTCCTGAAGAAATTCGTCGTACGT 96674 Query 1592286 TTAACATCAAGTACG 1592300 |||| |||||| ||| Sbjct 96675 TTAATATCAAGAACG 96689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106079334619055