Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq8275 122 8e-23 seq8587 113 4e-20 seq8832 104 2e-17 >seq8275 Length=204344 Score = 122 bits (134), Expect = 8e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| |||||||| || || || || ||||| || |||||| || Sbjct 59284 ATGCAGATCTTTGTGAAAACCCTAACCGGGAAGACAATCACACTCGAGGTTGAAGCCTCC 59343 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| |||||| ||||| || |||||||| || || ||||| Sbjct 59344 GACACTATTGAAAATGTGAAAGCAAAGATTCAAGATAAGGAAGGAATTCCACCGGATCAG 59403 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | ||||||||||| Sbjct 59404 CAACGACTTATCTTTGCCGG 59423 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| ||||| || ||||||||||| | ||||| || || || Sbjct 61051 ATGCAGATCTTCGTGAAAACTCTAACTGGAAAAACTATTACTTTGGAAGTGGAGGCATCC 61110 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||| || |||||||||||||| || || |||||| Sbjct 61111 GATACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 61170 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | ||||||||||| Sbjct 61171 CAGCGACTCATCTTTGCCGG 61190 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | ||||| || || || ||||||||||| | ||||| ||||| | Sbjct 60741 ATGCAAATCTTCGTGAAAACTCTGACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCG 60800 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||||| || |||||||||||||| || || ||||| Sbjct 60801 GACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 60860 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | ||||||||||| Sbjct 60861 CAGCGGCTCATCTTTGCCGG 60880 >seq8587 Length=192155 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || |||||||| || ||||| |||||| | Sbjct 141609 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACTATTACTCTTGAAGTCGAAGCCTCA 141550 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || || |||||||| ||||||||||| || || || ||||| Sbjct 141549 GATACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCCCCAGATCAG 141490 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| ||||||||||| || Sbjct 141489 CAACGATTGATCTTTGCTGG 141470 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || || || |||||||| || || || Sbjct 140131 ATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTCTCGAAGTTGAGGCTTCC 140072 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||||||||| || ||||| ||||| Sbjct 140071 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 140012 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || ||||||||||| || || || Sbjct 140011 CAGCGTTTGATCTTCGCTGGTAA 139989 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || ||||| |||||||| |||||| | Sbjct 141317 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTCTCGAAGTCGAAGCCTCG 141258 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| ||||| |||||||| || || ||||| Sbjct 141257 GATACGATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 141198 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || | |||||||| ||||| Sbjct 141197 CAGAGATTGATCTTCGCCGG 141178 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | ||||| || || || || ||||||||||| ||||| ||||| Sbjct 141919 ACTATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACTATTACGCTTGAAGTCGAAGCT 141860 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | |||| || ||| ||||| |||||||| || ||||| || || ||| Sbjct 141859 TCTGACACTATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGAT 141800 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 || || || ||||||| || || Sbjct 141799 CAGCAGCGACTGATCTTCGCAGG 141777 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || ||||| |||||||| ||||| | Sbjct 140428 ATGCAGATATTCGTGAAGACCCTCACTGGAAAGACAATTACCCTCGAAGTCGAAGCTTCG 140369 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || ||||||||||| || || ||||| Sbjct 140368 GACACCATTGAAAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGATCAG 140309 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| |||||||| || || Sbjct 140308 CAACGATTGATCTTCGCAGG 140289 >seq8832 Length=33236 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || || || || |||||||| |||||| | Sbjct 24309 ATGCAGATCTTCGTTAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCG 24250 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| ||||| |||||||| || || ||||| Sbjct 24249 GATACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 24190 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| ||||||||||| || Sbjct 24189 CAACGATTGATCTTTGCTGG 24170 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || |||||||| || || || Sbjct 22828 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTCC 22769 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| ||||||||||| || ||||||||||| Sbjct 22768 GATACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGATCAG 22709 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || ||||||||||| || || Sbjct 22708 CAGCGTTTGATCTTCGCTGG 22689 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || ||||| ||||| | Sbjct 23125 ATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAAGTCGAAGCTTCG 23066 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| || ||||||||||| || || ||||| Sbjct 23065 GACACCATCGAAAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGATCAG 23006 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| |||||||| || || Sbjct 23005 CAACGATTGATCTTCGCTGG 22986 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || || || || |||||||| |||||| | Sbjct 24015 ATGCAGATCTTCGTTAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCG 23956 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| ||||| |||||||| || || ||||| Sbjct 23955 GATACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 23896 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || ||||||| || || Sbjct 23895 CAGCGACTGATCTTCGCTGG 23876 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || |||||||| ||||| || Sbjct 22533 ATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTCC 22474 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || || |||||||| ||||| |||||||| || || || || Sbjct 22473 GATACCATCGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAG 22414 Query 24824 CAACGTTTGATCTTTGCCGG 24843 || || | |||||||| || Sbjct 22413 CAGCGACTCATCTTTGCTGG 22394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449824969656200