Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq6182 87.8 1e-12 >seq6182 Length=223794 Score = 87.8 bits (96), Expect = 1e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 34319 CAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCA 34378 |||| ||||| || || ||| | ||||| | |||||||| |||||||||||| || | Sbjct 135986 CAGTTTCCGGATTATCGCATGCTGGACAGAGAACAAACTTCTTGATGAAACCATCCAGGA 136045 Query 34379 GGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAAT 34438 || || ||||| | | ||| || || ||||||||| | || |||||| | | Sbjct 136046 TATCTTGCAACTTCGCTGCGTCATGTTCACCATTGACGATGTAACGCTCGTTTCTCGCGT 136105 Query 34439 CGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || | ||||| ||||||| |||||| || ||||| ||||| || Sbjct 136106 CGTAATTTGTTTGAGCGCCCAACTCGCAGCCAAAGTATTTTGTTGG 136151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412776618087095