Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq12098 122 1e-21
seq4 104 4e-16
seq9861 100 5e-15
>seq12098
Length=305187
Score = 122 bits (134), Expect = 1e-21
Identities = 168/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| |||| || || || | |
Sbjct 186616 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAAACGGCGTGCTTGGCGAGCTCTCCAGGAA 186557
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
||||| || ||||| |||||||| ||||| | |||||| || ||||| |
Sbjct 186556 GAATCAGTCGGACGGCAGTCTGGATTTCGCGAGATGAGATCGTCGAACGTTTGTTGTAGT 186497
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || || || || | |||| || |||| | ||| || || ||||||||||
Sbjct 186496 GAGCAAGACGAGATGCTTCAGCAGCGATACGTTCGAAAACGTCATTTACGAACGAGTTCA 186437
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||| ||||| | |||| |||| || ||| ||||| || || || || ||
Sbjct 186436 TGATGGACATAGCTTTGGAAGAGACACCTGTGTCAGGGTGTACTTGTTTAAGTAC 186382
Score = 118 bits (130), Expect = 2e-20
Identities = 167/235 (71%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || ||||||||| |||| || || || | |
Sbjct 184226 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAAACGGCGTGCTTGGCGAGCTCTCCAGGAA 184167
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
||||| || ||||| |||||||| ||||| | |||||| || ||||| |
Sbjct 184166 GAATCAGTCGGACGGCAGTCTGGATTTCGCGAGATGAGATCGTCGAACGTTTGTTGTAGT 184107
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || || || || | |||| || |||| | || || || ||||||||||
Sbjct 184106 GGGCAAGACGAGATGCTTCAGCAGCGATACGTTCGAAAACATCATTCACGAACGAGTTCA 184047
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||| ||||| | |||| |||| || ||| ||||| || || || || ||
Sbjct 184046 TGATGGACATAGCTTTGGAAGAGACACCTGTGTCAGGGTGTACTTGTTTAAGTAC 183992
>seq4
Length=92000
Score = 104 bits (114), Expect = 4e-16
Identities = 164/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || |||||||| |||| || || || | |
Sbjct 6659 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAAACGGCGTGTTTGGCGAGCTCTCCAGGAA 6718
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
|||||| || | ||| |||||||| ||||| | |||||| || ||||| |
Sbjct 6719 GGATCAGTCGGATGGCAGTCTGGATTTCGCGAGATGAGATCGTCGAACGTTTGTTGTGGT 6778
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| |||| || || |||| |||| || || | || || || ||||||||||
Sbjct 6779 GGGCCAAACGAGATGCTTCGGCAGCGATACGTTCAGAAACATCATTCACGAACGAGTTCA 6838
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||| || || | |||| |||| || ||| ||||| || || || || ||
Sbjct 6839 TGATGGATATAGCTTTGAAAGAGACACCTGTGTCAGGGTGTACTTGTTTAAGTAC 6893
>seq9861
Length=19499
Score = 100 bits (110), Expect = 5e-15
Identities = 163/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||| ||| ||||| || |||||||| |||| || || || | |
Sbjct 18930 TGTACTTGGTGACGGCCTCGGTGCCCTCGGAAACGGCGTGTTTGGCGAGCTCTCCAGGAA 18871
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
||||| || | ||| |||||||| ||||| | |||||| || ||||| |
Sbjct 18870 GTATCAGTCGGATGGCAGTCTGGATTTCGCGAGATGAGATCGTCGAACGTTTGTTGTGGT 18811
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| ||||| || || |||| |||| || || | || || || ||||||||||
Sbjct 18810 GGGCCAGACGAGATGCTTCGGCAGCGATACGTTCAGAAACATCATTCACGAACGAGTTCA 18751
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
|||| ||||| | |||| |||| || || ||||| || || || || ||
Sbjct 18750 TGATGGACATAGCTTTGGAAGAGACACCTGTATCAGGGTGTACTTGTTTAAGTAC 18696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7914872572544685
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |