Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq12098 122 1e-21 seq4 104 4e-16 seq9861 100 5e-15 >seq12098 Length=305187 Score = 122 bits (134), Expect = 1e-21 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||| || || || | | Sbjct 186616 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAAACGGCGTGCTTGGCGAGCTCTCCAGGAA 186557 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| |||||||| ||||| | |||||| || ||||| | Sbjct 186556 GAATCAGTCGGACGGCAGTCTGGATTTCGCGAGATGAGATCGTCGAACGTTTGTTGTAGT 186497 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || || | |||| || |||| | ||| || || |||||||||| Sbjct 186496 GAGCAAGACGAGATGCTTCAGCAGCGATACGTTCGAAAACGTCATTTACGAACGAGTTCA 186437 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | |||| |||| || ||| ||||| || || || || || Sbjct 186436 TGATGGACATAGCTTTGGAAGAGACACCTGTGTCAGGGTGTACTTGTTTAAGTAC 186382 Score = 118 bits (130), Expect = 2e-20 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||| || || || | | Sbjct 184226 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAAACGGCGTGCTTGGCGAGCTCTCCAGGAA 184167 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || ||||| |||||||| ||||| | |||||| || ||||| | Sbjct 184166 GAATCAGTCGGACGGCAGTCTGGATTTCGCGAGATGAGATCGTCGAACGTTTGTTGTAGT 184107 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || || || || | |||| || |||| | || || || |||||||||| Sbjct 184106 GGGCAAGACGAGATGCTTCAGCAGCGATACGTTCGAAAACATCATTCACGAACGAGTTCA 184047 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | |||| |||| || ||| ||||| || || || || || Sbjct 184046 TGATGGACATAGCTTTGGAAGAGACACCTGTGTCAGGGTGTACTTGTTTAAGTAC 183992 >seq4 Length=92000 Score = 104 bits (114), Expect = 4e-16 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||||| |||| || || || | | Sbjct 6659 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAAACGGCGTGTTTGGCGAGCTCTCCAGGAA 6718 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 |||||| || | ||| |||||||| ||||| | |||||| || ||||| | Sbjct 6719 GGATCAGTCGGATGGCAGTCTGGATTTCGCGAGATGAGATCGTCGAACGTTTGTTGTGGT 6778 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| || || |||| |||| || || | || || || |||||||||| Sbjct 6779 GGGCCAAACGAGATGCTTCGGCAGCGATACGTTCAGAAACATCATTCACGAACGAGTTCA 6838 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| || || | |||| |||| || ||| ||||| || || || || || Sbjct 6839 TGATGGATATAGCTTTGAAAGAGACACCTGTGTCAGGGTGTACTTGTTTAAGTAC 6893 >seq9861 Length=19499 Score = 100 bits (110), Expect = 5e-15 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||| ||| ||||| || |||||||| |||| || || || | | Sbjct 18930 TGTACTTGGTGACGGCCTCGGTGCCCTCGGAAACGGCGTGTTTGGCGAGCTCTCCAGGAA 18871 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||||| || | ||| |||||||| ||||| | |||||| || ||||| | Sbjct 18870 GTATCAGTCGGATGGCAGTCTGGATTTCGCGAGATGAGATCGTCGAACGTTTGTTGTGGT 18811 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| || || |||| |||| || || | || || || |||||||||| Sbjct 18810 GGGCCAGACGAGATGCTTCGGCAGCGATACGTTCAGAAACATCATTCACGAACGAGTTCA 18751 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 |||| ||||| | |||| |||| || || ||||| || || || || || Sbjct 18750 TGATGGACATAGCTTTGGAAGAGACACCTGTATCAGGGTGTACTTGTTTAAGTAC 18696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914872572544685