Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq8587 91.5 1e-13 seq8832 86.0 4e-12 >seq8587 Length=192155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||||| ||| ||||||||| | || | ||||||||||| | ||||| Sbjct 140882 CCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAGCC 140941 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 |||||| | || | || || ||||| |||| ||| || |||||||| || ||| Sbjct 140942 TTGACGTTCTCAATGGTATCCGAAGCTTCGACTTCAAGGGTAATTGTCTTTCCAGTAAGG 141001 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| Sbjct 141002 GTCTTGACGAAGATCTGCAT 141021 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 ||||||||||||| || ||||| ||| | || | || |||||||| | || || Sbjct 141178 CCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 141237 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| | | |||| || ||| ||||| || | || ||||||||||| |||||| Sbjct 141238 TTCACGTTTTCAATCGTATCCGAGGCTTCGACTTCGAGAGTAATGGTCTTTCCAGTGAGG 141297 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| |||||||||||||| Sbjct 141298 GTCTTGACAAAGATCTGCAT 141317 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||||||||| |||||||| | || | || |||||||| | || || | Sbjct 139693 CCAGCAAAGATCAGTCGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCT 139752 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| | || | ||| ||||| || || | ||| |||||||| || |||||| Sbjct 139753 TTCACGTTCTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 139812 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| Sbjct 139813 GTCTTGACGAAGATCTGCAT 139832 >seq8832 Length=33236 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||||| ||||||||| ||| | || | || || || || | || || Sbjct 22986 CCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 23045 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 |||||| | | || | || || ||||| |||| ||| || |||||||| |||||| Sbjct 23046 TTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGAGG 23105 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| |||||||||||||| Sbjct 23106 GTCTTGACAAAGATCTGCAT 23125 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||||| ||| ||||||||| | || | |||||| ||||| | || || Sbjct 23583 CCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTGGCC 23642 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 |||||| | || | || ||||| || || | ||| |||||||| || |||||| Sbjct 23643 TTGACGTTCTCGATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 23702 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| Sbjct 23703 GTCTTAACGAAGATCTGCAT 23722 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || |||||||||||||| ||||| ||| | || | || |||||||| | || || Sbjct 23876 CCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 23935 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || || | | || | || ||| ||||| || | ||| ||||||||||| |||||| Sbjct 23936 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 23995 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| Sbjct 23996 GTCTTAACGAAGATCTGCAT 24015 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||| ||||| ||||||||| | || | || |||||||| | || || Sbjct 22394 CCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 22453 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || ||| | | || | || || ||||| || | ||| ||||||||||| |||||| Sbjct 22454 TTCACGTTTTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 22513 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| Sbjct 22514 GTCTTGACGAAGATCTGCAT 22533 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897 || || ||||||| ||||||||| ||| | || | || |||||||| | || || Sbjct 24170 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 24229 Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957 || || | | || | || ||| ||||| || | ||| ||||||||||| |||||| Sbjct 24230 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 24289 Query 34958 GTCTTTACAAAGATCTGCAT 34977 ||||| || ||||||||||| Sbjct 24290 GTCTTAACGAAGATCTGCAT 24309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325641535444385