Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq8587 91.5 1e-13
seq8832 86.0 4e-12
>seq8587
Length=192155
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||||| ||| ||||||||| | || | ||||||||||| | |||||
Sbjct 140882 CCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAGCC 140941
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|||||| | || | || || ||||| |||| ||| || |||||||| || |||
Sbjct 140942 TTGACGTTCTCAATGGTATCCGAAGCTTCGACTTCAAGGGTAATTGTCTTTCCAGTAAGG 141001
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| || |||||||||||
Sbjct 141002 GTCTTGACGAAGATCTGCAT 141021
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
||||||||||||| || ||||| ||| | || | || |||||||| | || ||
Sbjct 141178 CCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 141237
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| ||| | | |||| || ||| ||||| || | || ||||||||||| ||||||
Sbjct 141238 TTCACGTTTTCAATCGTATCCGAGGCTTCGACTTCGAGAGTAATGGTCTTTCCAGTGAGG 141297
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| ||||||||||||||
Sbjct 141298 GTCTTGACAAAGATCTGCAT 141317
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| || ||||||||||| |||||||| | || | || |||||||| | || || |
Sbjct 139693 CCAGCAAAGATCAGTCGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCT 139752
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| ||| | || | ||| ||||| || || | ||| |||||||| || ||||||
Sbjct 139753 TTCACGTTCTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 139812
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| || |||||||||||
Sbjct 139813 GTCTTGACGAAGATCTGCAT 139832
>seq8832
Length=33236
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||||| ||||||||| ||| | || | || || || || | || ||
Sbjct 22986 CCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 23045
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|||||| | | || | || || ||||| |||| ||| || |||||||| ||||||
Sbjct 23046 TTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGAGG 23105
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| ||||||||||||||
Sbjct 23106 GTCTTGACAAAGATCTGCAT 23125
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||||| ||| ||||||||| | || | |||||| ||||| | || ||
Sbjct 23583 CCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATCCCCTCTTTGTCCTGAATCTTGGCC 23642
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|||||| | || | || ||||| || || | ||| |||||||| || ||||||
Sbjct 23643 TTGACGTTCTCGATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 23702
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| || |||||||||||
Sbjct 23703 GTCTTAACGAAGATCTGCAT 23722
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| |||||||||||||| ||||| ||| | || | || |||||||| | || ||
Sbjct 23876 CCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 23935
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| || | | || | || ||| ||||| || | ||| ||||||||||| ||||||
Sbjct 23936 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 23995
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| || |||||||||||
Sbjct 23996 GTCTTAACGAAGATCTGCAT 24015
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| || ||||| ||||| ||||||||| | || | || |||||||| | || ||
Sbjct 22394 CCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 22453
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| ||| | | || | || || ||||| || | ||| ||||||||||| ||||||
Sbjct 22454 TTCACGTTTTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 22513
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| || |||||||||||
Sbjct 22514 GTCTTGACGAAGATCTGCAT 22533
Score = 82.4 bits (90), Expect = 5e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 34838 CCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGT 34897
|| || ||||||| ||||||||| ||| | || | || |||||||| | || ||
Sbjct 24170 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 24229
Query 34898 TTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGG 34957
|| || | | || | || ||| ||||| || | ||| ||||||||||| ||||||
Sbjct 24230 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 24289
Query 34958 GTCTTTACAAAGATCTGCAT 34977
||||| || |||||||||||
Sbjct 24290 GTCTTAACGAAGATCTGCAT 24309
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325641535444385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |