Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq8587 102 6e-17
seq8275 95.1 9e-15
>seq8587
Length=192155
Score = 102 bits (112), Expect = 6e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706
|||||| | ||||||| ||||||||| || ||||| || |||||||| || | ||
Sbjct 141470 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 141529
Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766
|||||| |||| | || || || ||| ||||||||||| ||||| || ||||| |
Sbjct 141530 TTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGA 141589
Query 29767 GTTTTAACAAATATCTGCATT 29787
|| || ||||| |||||||||
Sbjct 141590 GTCTTGACAAAGATCTGCATT 141610
Score = 86.0 bits (94), Expect = 5e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT 29715
||||||| ||||||||| || ||||| || ||||| || || | || ||||| ||
Sbjct 140298 ATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTT 140357
Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775
|| | ||||| ||| ||| ||||| || || || || || ||||| | ||| || ||
Sbjct 140358 TCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGAGGGTCTTCACG 140417
Query 29776 AATATCTGCATT 29787
||||||||||||
Sbjct 140418 AATATCTGCATT 140429
>seq8275
Length=204344
Score = 95.1 bits (104), Expect = 9e-15
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Minus
Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705
|| ||| | || | || |||||||||||| ||||| || || || ||||| ||| ||||
Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTG-AATCTTTGC 59365
Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765
||| ||| |||| | |||||| || ||| || || || || || || || || ||||
Sbjct 59364 TTTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAG 59305
Query 29766 GGTTTTAACAAATATCTGCAT 29786
|||||| ||||| ||||||||
Sbjct 59304 GGTTTTCACAAAGATCTGCAT 59284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385158565896015
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |