Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq8587 102 6e-17 seq8275 95.1 9e-15 >seq8587 Length=192155 Score = 102 bits (112), Expect = 6e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | ||||||| ||||||||| || ||||| || |||||||| || | || Sbjct 141470 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 141529 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 |||||| |||| | || || || ||| ||||||||||| ||||| || ||||| | Sbjct 141530 TTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGA 141589 Query 29767 GTTTTAACAAATATCTGCATT 29787 || || ||||| ||||||||| Sbjct 141590 GTCTTGACAAAGATCTGCATT 141610 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTT 29715 ||||||| ||||||||| || ||||| || ||||| || || | || ||||| || Sbjct 140298 ATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCCTTGACGTTT 140357 Query 29716 TCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACA 29775 || | ||||| ||| ||| ||||| || || || || || ||||| | ||| || || Sbjct 140358 TCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGAGGGTCTTCACG 140417 Query 29776 AATATCTGCATT 29787 |||||||||||| Sbjct 140418 AATATCTGCATT 140429 >seq8275 Length=204344 Score = 95.1 bits (104), Expect = 9e-15 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG- 29705 || ||| | || | || |||||||||||| ||||| || || || ||||| ||| |||| Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTG-AATCTTTGC 59365 Query 29706 TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 ||| ||| |||| | |||||| || ||| || || || || || || || || |||| Sbjct 59364 TTTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAG 59305 Query 29766 GGTTTTAACAAATATCTGCAT 29786 |||||| ||||| |||||||| Sbjct 59304 GGTTTTCACAAAGATCTGCAT 59284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385158565896015