Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq8640 203 2e-46 seq9358 109 4e-18 >seq8640 Length=189999 Score = 203 bits (224), Expect = 2e-46 Identities = 658/1012 (65%), Gaps = 10/1012 (1%) Strand=Plus/Minus Query 281468 ACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCC 281527 || |||||||| || || ||||| | |||||||| || || || | ||| |||| Sbjct 72654 ACCTCAATTTGCGGTACGCCTCTTGGTGCAGGTGGAATTCCAGACAGCTCGAATTTTCCA 72595 Query 281528 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA 281587 || ||| || || ||||| | | ||||| || ||||| | ||||| || || Sbjct 72594 AGTAGATTGTTGTCCTTAGTCATTGCACGTTCTCCTTCGAAGACCTGGATGAGCACACCA 72535 Query 281588 GTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTT 281646 | || || || || || || || ||| ||||| | | | | ||||| || ||||| Sbjct 72534 GGCTGGTTGTCAGAGTAGGTGGTGAATG-TCTGGCTGGTCTTCGTTGGAATGGTGGTGTT 72476 Query 281647 TCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGT 281706 || | || | | ||||| | ||| ||||| ||||| | ||| || || ||||| | Sbjct 72475 CCTCTTGATCAAAGCTGTCATTACACCTCCAGCGGTTTCGATACCGAGTGATAGAGGCGC 72416 Query 281707 GACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGC 281766 ||||| | |||| | || || | || | | ||| ||||||||| || Sbjct 72415 CACATCGAGAAGGAGCAGATCCTGCACAGCCTCCGACTTGTCACCGGAAAGAATAGCGGC 72356 Query 281767 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTT 281826 ||||| || || || || |||||||| |||||||| || | | | || |||| ||| Sbjct 72355 TTGAACTGCGGCTCCGTAGGCAACAGCCTCATCAGGGTTGATCGACTTGTTGAGTTCTTT 72296 Query 281827 ACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAA 281885 ||| ||| | || || || || | ||| || || |||||||||| ||||||||||| Sbjct 72295 TCCAGAGAACAGATCAGATAGCAGCT-TCTGCACTTTTGGAATACGAGTTGATCCTCCAA 72237 Query 281886 CTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAA 281945 | | || || ||||| | ||| || |||| || | ||| | || |||| Sbjct 72236 CAAGAACGATATCATGGATCTGGCTCTTGTCCATCTTAGCATCTCTCAGCGACTTCTCAA 72177 Query 281946 CGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA 282005 | || || | | | || | || | || || || |||||| || | ||||| Sbjct 72176 CAGGATCCATGGTGGAACGGAAAAGATCAGCGCACAGCTCCTCGAATCGGGCACGAGTAA 72117 Query 282006 GAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC 282064 || | || || || || || ||||| | ||||||| ||| |||| || || | | Sbjct 72116 T-GTTAGTGTAGAAATCGATACCCTCGAAGAGTGAATCAATTTCGATCGAAGCCTGGGAC 72058 Query 282065 GAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTT 282124 ||||| || || | ||| || |||||||| || || || | || | ||| | || Sbjct 72057 GAAGATGAAAGGGTACGCTTGGCACGTTCGCAAGCAGTACGAAGACGTCGCAGAGCACGA 71998 Query 282125 GCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTA 282182 | ||||| | | | ||| | || | || |||||||| || | || | | | Sbjct 71997 G--GATTGGTGTTGAGATCCTTCTTGTGCTTCCTCTTGAATTCAGCGACGAAGTGGTTCA 71940 Query 282183 CAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTT 282242 | | ||| || ||||| || || ||||| | | || | ||| | |||| | | |||| Sbjct 71939 CCATACGGTTGTCAAAGTCCTCTCCTCCAAGGTGGGTGTCTCCAGCTGTAGATTTCACTT 71880 Query 282243 GGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAA 282302 || | |||||| |||| | | | | ||||| ||| || || || | ||| | Sbjct 71879 CAAAGATTCCATCCTCAATGGTAAGGATCGACACATCGAAGGTACCGCCTCCAAGATCGA 71820 Query 282303 AAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 282362 |||| || || || || | | || || || ||||| || || | |||||||| Sbjct 71819 AAATGAGCACGTTTCGCTCGCCGGTTCCCTTCTTGTCTAGACCGTAGGCGATAGCAGCAG 71760 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 | || ||||| || || || | | ||||| |||||||||||| |||||||||||| | Sbjct 71759 CGGTGGGTTCGTTGATGATACGAAGGACATTGAGACCAGCAATTGCTCCTGCATCTTTGG 71700 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 | ||||| | ||| || ||||| || || || || || || | ||| ||||| Sbjct 71699 TAGCTTGACGTTGAGAGTCGTTGAAGTACGCTGGTACTGTGACAACAGCATC 71648 >seq9358 Length=25477 Score = 109 bits (120), Expect = 4e-18 Identities = 170/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || |||||||| ||||| || | ||||||||||||||||||||| || || | | ||| Sbjct 18953 TTCTTATCAAGCCCATATGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAACAACG 19012 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || | |||||||| |||| |||||||| ||||| |||| || | || || ||||| Sbjct 19013 TTTAATCCAGCAATCGTTCCCGCATCTTTGGTGGCCTGTCGCTGAGCGTCATTGAAATAA 19072 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTT 282509 || || || || | || || | | ||||| ||||||| ||| || || || | | Sbjct 19073 GCTGGTACCGTCACGACCGCGTGCTTCACTTCCTTTCCAAGATA--CGATTCAGCAATCT 19130 Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCAT 282569 ||||||||| | | | ||| | || || | ||| || | | ||||||| ||| | Sbjct 19131 CTTTCATTTTTCCGAGGACCATGGCAGAGATCTCTTCCGGTGTGAACTGCTTGGTTTCTT 19190 Query 282570 T 282570 | Sbjct 19191 T 19191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739996328078790