Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq8640 203 2e-46
seq9358 109 4e-18
>seq8640
Length=189999
Score = 203 bits (224), Expect = 2e-46
Identities = 658/1012 (65%), Gaps = 10/1012 (1%)
Strand=Plus/Minus
Query 281468 ACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCC 281527
|| |||||||| || || ||||| | |||||||| || || || | ||| ||||
Sbjct 72654 ACCTCAATTTGCGGTACGCCTCTTGGTGCAGGTGGAATTCCAGACAGCTCGAATTTTCCA 72595
Query 281528 AGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACA 281587
|| ||| || || ||||| | | ||||| || ||||| | ||||| || ||
Sbjct 72594 AGTAGATTGTTGTCCTTAGTCATTGCACGTTCTCCTTCGAAGACCTGGATGAGCACACCA 72535
Query 281588 GTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAA-GGAATTGTTGTGTT 281646
| || || || || || || || ||| ||||| | | | | ||||| || |||||
Sbjct 72534 GGCTGGTTGTCAGAGTAGGTGGTGAATG-TCTGGCTGGTCTTCGTTGGAATGGTGGTGTT 72476
Query 281647 TCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGT 281706
|| | || | | ||||| | ||| ||||| ||||| | ||| || || ||||| |
Sbjct 72475 CCTCTTGATCAAAGCTGTCATTACACCTCCAGCGGTTTCGATACCGAGTGATAGAGGCGC 72416
Query 281707 GACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGC 281766
||||| | |||| | || || | || | | ||| ||||||||| ||
Sbjct 72415 CACATCGAGAAGGAGCAGATCCTGCACAGCCTCCGACTTGTCACCGGAAAGAATAGCGGC 72356
Query 281767 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTT 281826
||||| || || || || |||||||| |||||||| || | | | || |||| |||
Sbjct 72355 TTGAACTGCGGCTCCGTAGGCAACAGCCTCATCAGGGTTGATCGACTTGTTGAGTTCTTT 72296
Query 281827 ACCATTGAAAAAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAA 281885
||| ||| | || || || || | ||| || || |||||||||| |||||||||||
Sbjct 72295 TCCAGAGAACAGATCAGATAGCAGCT-TCTGCACTTTTGGAATACGAGTTGATCCTCCAA 72237
Query 281886 CTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAA 281945
| | || || ||||| | ||| || |||| || | ||| | || ||||
Sbjct 72236 CAAGAACGATATCATGGATCTGGCTCTTGTCCATCTTAGCATCTCTCAGCGACTTCTCAA 72177
Query 281946 CGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA 282005
| || || | | | || | || | || || || |||||| || | |||||
Sbjct 72176 CAGGATCCATGGTGGAACGGAAAAGATCAGCGCACAGCTCCTCGAATCGGGCACGAGTAA 72117
Query 282006 GAGTGACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTC 282064
|| | || || || || || ||||| | ||||||| ||| |||| || || | |
Sbjct 72116 T-GTTAGTGTAGAAATCGATACCCTCGAAGAGTGAATCAATTTCGATCGAAGCCTGGGAC 72058
Query 282065 GAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTT 282124
||||| || || | ||| || |||||||| || || || | || | ||| | ||
Sbjct 72057 GAAGATGAAAGGGTACGCTTGGCACGTTCGCAAGCAGTACGAAGACGTCGCAGAGCACGA 71998
Query 282125 GCTGATTGAT--TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTA 282182
| ||||| | | | ||| | || | || |||||||| || | || | | |
Sbjct 71997 G--GATTGGTGTTGAGATCCTTCTTGTGCTTCCTCTTGAATTCAGCGACGAAGTGGTTCA 71940
Query 282183 CAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTT 282242
| | ||| || ||||| || || ||||| | | || | ||| | |||| | | ||||
Sbjct 71939 CCATACGGTTGTCAAAGTCCTCTCCTCCAAGGTGGGTGTCTCCAGCTGTAGATTTCACTT 71880
Query 282243 GGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAA 282302
|| | |||||| |||| | | | | ||||| ||| || || || | ||| |
Sbjct 71879 CAAAGATTCCATCCTCAATGGTAAGGATCGACACATCGAAGGTACCGCCTCCAAGATCGA 71820
Query 282303 AAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAG 282362
|||| || || || || | | || || || ||||| || || | ||||||||
Sbjct 71819 AAATGAGCACGTTTCGCTCGCCGGTTCCCTTCTTGTCTAGACCGTAGGCGATAGCAGCAG 71760
Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422
| || ||||| || || || | | ||||| |||||||||||| |||||||||||| |
Sbjct 71759 CGGTGGGTTCGTTGATGATACGAAGGACATTGAGACCAGCAATTGCTCCTGCATCTTTGG 71700
Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474
| ||||| | ||| || ||||| || || || || || || | ||| |||||
Sbjct 71699 TAGCTTGACGTTGAGAGTCGTTGAAGTACGCTGGTACTGTGACAACAGCATC 71648
>seq9358
Length=25477
Score = 109 bits (120), Expect = 4e-18
Identities = 170/241 (71%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
|| |||||||| ||||| || | ||||||||||||||||||||| || || | | |||
Sbjct 18953 TTCTTATCAAGCCCATATGCGATAGCAGCAGCAGTTGGTTCATTGATGATACGAACAACG 19012
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| | |||||||| |||| |||||||| ||||| |||| || | || || |||||
Sbjct 19013 TTTAATCCAGCAATCGTTCCCGCATCTTTGGTGGCCTGTCGCTGAGCGTCATTGAAATAA 19072
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTT 282509
|| || || || | || || | | ||||| ||||||| ||| || || || | |
Sbjct 19073 GCTGGTACCGTCACGACCGCGTGCTTCACTTCCTTTCCAAGATA--CGATTCAGCAATCT 19130
Query 282510 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCAT 282569
||||||||| | | | ||| | || || | ||| || | | ||||||| ||| |
Sbjct 19131 CTTTCATTTTTCCGAGGACCATGGCAGAGATCTCTTCCGGTGTGAACTGCTTGGTTTCTT 19190
Query 282570 T 282570
|
Sbjct 19191 T 19191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3739996328078790
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |