Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq8275 138 2e-27 seq8832 122 2e-22 seq8587 118 2e-21 seq8716 95.1 2e-14 seq8131 91.5 3e-13 >seq8275 Length=204344 Score = 138 bits (152), Expect = 2e-27 Identities = 115/141 (82%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| || | || ||||| || || ||||||||||||||||||||||| || Sbjct 60230 CCTGCAAAGATAAGCCGCTGCTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTAGCC 60171 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| || |||||| | || || ||||| || |||||||| ||||||||| Sbjct 60170 TTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAAC 60111 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 60110 GTCTTCACAAAGATCTGCATT 60090 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| |||| ||| ||||| || || ||||||||||||||||||||||||||| Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGCT 59364 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| || || | ||| || || | || || ||||| || || | Sbjct 59363 TTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 59304 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || ||||| |||||||| Sbjct 59303 GTTTTCACAAAGATCTGCAT 59284 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || ||||| || || ||||| || ||||| || ||||||||||| ||||| ||||| Sbjct 60586 TTACCTGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 60527 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || || || || || || ||| || |||||||||||||| || ||||| || ||| Sbjct 60526 GCCTTCACGTTCTCGATGGTGTCAGAAGCCTCTACTTCCAAAGTGATTGTCTTCCCGGTC 60467 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 || ||||| || || || |||||| Sbjct 60466 AATGTCTTCACGAAAATTTGCATT 60443 Score = 114 bits (126), Expect = 3e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || |||| || || ||||| || || |||||||||||||||||||| || Sbjct 59717 CCGGCAAATATGAGTCGCTGCTGGTCTGGTGGAATGCCTTCCTTATCTTGAATCTTGGCC 59658 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| || || | || ||||||| || |||||||| || ||||| Sbjct 59657 TTCACATTCTCAATTGTGTCCGAGGCCTCGACTTCCAGGGTGATCGTCTTTCCAGTCAAT 59598 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||||||||| || |||||| Sbjct 59597 GTCTTTACAAAGATTTGCATT 59577 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || |||||||| |||| |||||||| || || |||||||| || || |||||||| ||| Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || |||||||| |||||||| | || ||||||||||| || || || || || | Sbjct 61130 TTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAGA 61071 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || |||||||| Sbjct 61070 GTTTTCACGAAGATCTGCAT 61051 >seq8832 Length=33236 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| |||| ||| |||||||| || ||||| ||||| ||||||||||| ||| Sbjct 24478 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 24537 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| || ||| || ||| ||||| | || || ||||| ||||||| Sbjct 24538 TTAACATTTTCAATGGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTCTTTCCTGTCAGA 24597 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || |||||||| Sbjct 24598 GTTTTGACGAAAATCTGCAT 24617 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| | || || || ||||| || |||||||||||||| ||||| || || Sbjct 23287 CCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCC 23346 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||| || ||||| | ||| ||||| | ||| |||||||| || || | Sbjct 23347 TTTACATTTTCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGA 23406 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 23407 GTCTTGACGAAGATTTGCATT 23427 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| | || ||| |||||||| || ||||||||||| || || ||||| || Sbjct 24170 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 24229 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| ||||| | ||| ||||| | || || ||||| || || | Sbjct 24230 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 24289 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 24290 GTCTTAACGAAGATCTGCATT 24310 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| |||| || |||||||| || ||||||||||| || || ||||| || Sbjct 23876 CCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 23935 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| ||||| | ||| ||||| | || || ||||| || || | Sbjct 23936 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 23995 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 23996 GTCTTAACGAAGATCTGCATT 24016 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| || || ||||| || ||||||||||| || || ||||| || Sbjct 22394 CCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 22453 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || ||||| || ||||| || ||| ||||| | || || ||||| || || | Sbjct 22454 TTCACGTTTTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 22513 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 22514 GTCTTGACGAAGATCTGCATT 22534 Score = 93.3 bits (102), Expect = 8e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||| ||||| | | || ||||| ||||| || ||||| || || || ||||| || Sbjct 22689 CCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 22748 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| ||||| || || ||||| | || || |||||||| || | Sbjct 22749 TTCACATTTTCAATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 22808 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || ||||||||| Sbjct 22809 GTCTTGACGAAGATCTGCATT 22829 >seq8587 Length=192155 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| |||| || |||||||| || ||||| ||||| ||||||||||| ||| Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 141836 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| || ||| || ||| ||||| | || || ||||| ||||||| Sbjct 141837 TTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCAGA 141896 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || |||||||| Sbjct 141897 GTTTTGACGAAAATCTGCAT 141916 Score = 114 bits (126), Expect = 3e-20 Identities = 112/142 (79%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| | || ||| |||||||| || || ||||| || || || ||||| || Sbjct 141470 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 141529 Query 82731 TTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 || ||||||||||| ||||| | ||| ||| ||||| | ||| || ||||| || || | Sbjct 141530 TTGACATTTTCAATTGTATC-TGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAG 141588 Query 82790 CGTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 141589 AGTCTTGACAAAGATCTGCATT 141610 Score = 111 bits (122), Expect = 3e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| | ||| || |||||||| || ||||||||||| || || ||||| || Sbjct 141178 CCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 141237 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || |||||||||||||| | ||| ||||| | ||| || ||||| || || | Sbjct 141238 TTCACGTTTTCAATCGTATCCGAGGCTTCGACTTCGAGAGTAATGGTCTTTCCAGTGAGG 141297 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| ||||| ||||||||| Sbjct 141298 GTCTTGACAAAGATCTGCATT 141318 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| |||| || || || || || ||||||||||| ||||||||||| ||| Sbjct 139693 CCAGCAAAGATCAGTCGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCT 139752 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || || || || |||||| || || ||||| | || || |||||||| || | Sbjct 139753 TTCACGTTCTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 139812 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| Sbjct 139813 GTCTTGACGAAGATCTGCAT 139832 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 ||||||||||| | || || || ||||| || |||||||||||||||||||| || || Sbjct 140587 CCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCC 140646 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 ||||||||||| || ||||| | || ||||| | ||| || ||||| || || | Sbjct 140647 TTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAAGG 140706 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || || || |||||| Sbjct 140707 GTCTTGACGAAGATTTGCATT 140727 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| | || ||| |||||||| || |||||||| ||||| || ||||| || Sbjct 140289 CCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 140348 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || || |||||||| || || || ||| ||||| | || || ||||| || || | Sbjct 140349 TTGACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGAGG 140408 Query 82791 GTCTTTACAAATATCTGCATT 82811 ||||| || |||||||||||| Sbjct 140409 GTCTTCACGAATATCTGCATT 140429 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||| ||||| | | || ||||||||||| || ||||| || || || ||||| Sbjct 139989 TTACCAGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATCTTG 140048 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||||||||| || || || || ||||| | ||| || ||||| || || Sbjct 140049 GCCTTCACATTTTCAATGGTGTCGGAAGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTA 140108 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | ||||| ||||| || |||||| Sbjct 140109 AGGGTCTTGACAAAGATTTGCATT 140132 >seq8716 Length=186993 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 82666 GTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCT 82725 |||| || || ||||| |||| || ||||| || || |||||||||||||| ||||||| Sbjct 74511 GTTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCT 74570 Query 82726 TTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTG 82785 | || || ||||| || || ||||| | || || |||| || || || || || | Sbjct 74571 TGGCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCG 74630 Query 82786 TCAACGTCTTTACAAATATCTGCATTATTA 82815 | | |||||||| || || ||||||| || Sbjct 74631 TAAGAGTCTTTACGAAGATTTGCATTACTA 74660 >seq8131 Length=46037 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || || ||||| |||| || ||||| || || |||||||||||||| |||||||| || Sbjct 31587 CCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTGGCC 31646 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| || || |||||| | || || || | || || || || || || | Sbjct 31647 TTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGA 31706 Query 82791 GTCTTTACAAATATCTGCATTATTA 82815 |||||||| || || ||||||| || Sbjct 31707 GTCTTTACGAAGATTTGCATTACTA 31731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981664733678185