Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq12098 104 3e-16 >seq12098 Length=305187 Score = 104 bits (114), Expect = 3e-16 Identities = 126/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || || ||| | |||| || |||| | || || | Sbjct 186427 ATGTCCATCATGAACTCGTTCGTAAATGACGTTTTCGAACGTATCGCTGCTGAAGCATCT 186486 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || |||||| || |||||| | ||||| |||||||| ||||| Sbjct 186487 CGTCTTGCTCACTACAACAAACGTTCGACGATCTCATCTCGCGAAATCCAGACTGCCGTC 186546 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| ||||||||| ||||||||||||| Sbjct 186547 CGACTGATTCTTCCTGGAGAGCTCGCCAAGCACGCCGTTTCCGAGGGCACCA 186598 Score = 98.7 bits (108), Expect = 1e-14 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| |||||||||||||| || || || | |||| || |||| | || || | Sbjct 184037 ATGTCCATCATGAACTCGTTCGTGAATGATGTTTTCGAACGTATCGCTGCTGAAGCATCT 184096 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || |||||| || |||||| | ||||| |||||||| ||||| Sbjct 184097 CGTCTTGCCCACTACAACAAACGTTCGACGATCTCATCTCGCGAAATCCAGACTGCCGTC 184156 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||||| | | || || || |||| ||||||||| ||||||||||||| Sbjct 184157 CGACTGATTCTTCCTGGAGAGCTCGCCAAGCACGCCGTTTCCGAGGGCACCA 184208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176565524512230