Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq8275 100 3e-16
seq8587 82.4 8e-11
>seq8275
Length=204344
Score = 100 bits (110), Expect = 3e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
|| ||||| || | ||||||||||| ||||| || |||||||| || ||||| || |
Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 60821
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
||||| || | |||||| || | |||||| || | ||||| ||||| || || | |
Sbjct 60820 TTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAGA 60761
Query 134694 GTTTTAACGAAAATTTGCAT 134713
||||| ||||| ||||||||
Sbjct 60760 GTTTTCACGAAGATTTGCAT 60741
>seq8587
Length=192155
Score = 82.4 bits (90), Expect = 8e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633
||||| || |||| ||||||||||| || || || || || || |||||||| || |
Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 141836
Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693
|| || || | ||||| || | ||| || || || ||||| || || || || | |
Sbjct 141837 TTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCAGA 141896
Query 134694 GTTTTAACGAAAATTTGCAT 134713
||||| |||||||| |||||
Sbjct 141897 GTTTTGACGAAAATCTGCAT 141916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505316809745800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |