Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq899 140 4e-28 seq7056 122 1e-22 >seq899 Length=82215 Score = 140 bits (154), Expect = 4e-28 Identities = 199/280 (71%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 |||| | ||| |||| |||||| ||||| || || || || | |||||||||| |||| Sbjct 23009 ACTCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTAT 22950 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 | || || || || | ||| | |||||||| || || || | ||||||||||| | | Sbjct 22949 TACCGCCTTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGC 22890 Query 69809 CATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAG 69868 |||||||| | ||||||||||| | ||| | ||| |||| | ||||| | Sbjct 22889 CATTAGATGTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGT 22830 Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 ||||||||||| || || | |||||||| || ||||| | ||||| ||||| || | Sbjct 22829 TCAGACCTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGA 22770 Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACA 69968 | || | ||| ||| || |||| | ||||| ||||| Sbjct 22769 TGCCAGCAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762 ||| ||||| || ||||| || || ||||| | ||||| ||| |||| ||||| ||| Sbjct 24567 ATGAGGATTGACAATTTGGAAATCACCAGAAAGAACTCTTCGACTGTAGATATTTGAGGT 24508 Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 || || || | || || || || || ||||| ||||| ||||| || ||||||||||| Sbjct 24507 GTACGGCTCAATGGACTCGTTGTTGCCAAGAATCTGAGCTGTTGACGCCGTTGGCATAGG 24448 Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGT 68853 || | ||| ||||| || | || ||||||| Sbjct 24447 GGCAAGCAACAAACTGTTGCGAACACCATGT 24417 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 70351 GTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGT 70410 |||| ||| || ||||| || | ||| ||||| || || ||||| |||||||||||||| Sbjct 22004 GTTTTCTTATGCAAATTGGAAACGGCGATTCTAGCGGCAAGAATGGCATAGTCAGGATGC 21945 Query 70411 TGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACT 70470 || || || | ||| || |||| |||||||| | || | ||| | || | ||| Sbjct 21944 TGAGTGGTCATCGAAGCCGCAGTTTCAGCAGCTAAGTTGTCCAGTTCCACTGTAGATACT 21885 Query 70471 CCGTTATATAGCCCTTGAATAACTTTCATGGCTA 70504 || || || || || |||||| ||||| |||| Sbjct 21884 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 21851 >seq7056 Length=51435 Score = 122 bits (134), Expect = 1e-22 Identities = 202/292 (69%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748 |||| | ||| |||| |||||||||||| || || || || | |||||||||| |||| Sbjct 22462 ACTCGAAAATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTAT 22521 Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808 | || || || || | || | |||||||| || || |||| ||||||||||| | | Sbjct 22522 TACCGCCTTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGC 22581 Query 69809 CATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAG 69868 |||| ||| | ||||||||||| | ||| ||| | || | ||||| | Sbjct 22582 CATTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGT 22641 Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928 ||||||||||| || || | || ||||| || ||||| | ||||| ||||| || | Sbjct 22642 TCAGACCTATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAA 22701 Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTG 69980 | || | || ||| || |||| | || || ||||| ||||| ||| Sbjct 22702 TGCCAGCAATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTG 22753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686797907160600