Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq899 140 4e-28
seq7056 122 1e-22
>seq899
Length=82215
Score = 140 bits (154), Expect = 4e-28
Identities = 199/280 (71%), Gaps = 0/280 (0%)
Strand=Plus/Minus
Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748
|||| | ||| |||| |||||| ||||| || || || || | |||||||||| ||||
Sbjct 23009 ACTCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTAT 22950
Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808
| || || || || | ||| | |||||||| || || || | ||||||||||| | |
Sbjct 22949 TACCGCCTTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGC 22890
Query 69809 CATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAG 69868
|||||||| | ||||||||||| | ||| | ||| |||| | ||||| |
Sbjct 22889 CATTAGATGTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGT 22830
Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928
||||||||||| || || | |||||||| || ||||| | ||||| ||||| || |
Sbjct 22829 TCAGACCTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGA 22770
Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACA 69968
| || | ||| ||| || |||| | ||||| |||||
Sbjct 22769 TGCCAGCAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730
Score = 102 bits (112), Expect = 1e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762
||| ||||| || ||||| || || ||||| | ||||| ||| |||| ||||| |||
Sbjct 24567 ATGAGGATTGACAATTTGGAAATCACCAGAAAGAACTCTTCGACTGTAGATATTTGAGGT 24508
Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822
|| || || | || || || || || ||||| ||||| ||||| || |||||||||||
Sbjct 24507 GTACGGCTCAATGGACTCGTTGTTGCCAAGAATCTGAGCTGTTGACGCCGTTGGCATAGG 24448
Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGT 68853
|| | ||| ||||| || | || |||||||
Sbjct 24447 GGCAAGCAACAAACTGTTGCGAACACCATGT 24417
Score = 84.2 bits (92), Expect = 3e-11
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 70351 GTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTCAGGATGT 70410
|||| ||| || ||||| || | ||| ||||| || || ||||| ||||||||||||||
Sbjct 22004 GTTTTCTTATGCAAATTGGAAACGGCGATTCTAGCGGCAAGAATGGCATAGTCAGGATGC 21945
Query 70411 TGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGTTGTAACT 70470
|| || || | ||| || |||| |||||||| | || | ||| | || | |||
Sbjct 21944 TGAGTGGTCATCGAAGCCGCAGTTTCAGCAGCTAAGTTGTCCAGTTCCACTGTAGATACT 21885
Query 70471 CCGTTATATAGCCCTTGAATAACTTTCATGGCTA 70504
|| || || || || |||||| ||||| ||||
Sbjct 21884 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 21851
>seq7056
Length=51435
Score = 122 bits (134), Expect = 1e-22
Identities = 202/292 (69%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 69689 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTAT 69748
|||| | ||| |||| |||||||||||| || || || || | |||||||||| ||||
Sbjct 22462 ACTCGAAAATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTAT 22521
Query 69749 TTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATAC 69808
| || || || || | || | |||||||| || || |||| ||||||||||| | |
Sbjct 22522 TACCGCCTTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGC 22581
Query 69809 CATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAG 69868
|||| ||| | ||||||||||| | ||| ||| | || | ||||| |
Sbjct 22582 CATTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGT 22641
Query 69869 ATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATA 69928
||||||||||| || || | || ||||| || ||||| | ||||| ||||| || |
Sbjct 22642 TCAGACCTATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAA 22701
Query 69929 TACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTG 69980
| || | || ||| || |||| | || || ||||| ||||| |||
Sbjct 22702 TGCCAGCAATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTG 22753
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686797907160600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |