Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq8275 96.9 3e-15
seq899 96.9 3e-15
seq7056 93.3 4e-14
seq8716 84.2 2e-11
seq8587 84.2 2e-11
>seq8275
Length=204344
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 27107 ACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166
|||||| | ||||| ||||| ||||| ||||| | || ||||| || ||||||
Sbjct 60881 ACCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGC 60822
Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226
||| | | |||| | ||||| | ||||| ||||| | || |||| ||| || |||||
Sbjct 60821 TTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAG 60762
Query 27227 AGTTTTCACAAAGATTTGCAT 27247
||||||||| |||||||||||
Sbjct 60761 AGTTTTCACGAAGATTTGCAT 60741
Score = 84.2 bits (92), Expect = 2e-11
Identities = 111/153 (73%), Gaps = 1/153 (1%)
Strand=Plus/Minus
Query 27107 ACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166
|||||| | || || || || |||||||| || | || || ||||| |||||
Sbjct 59424 ACCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGC 59365
Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226
||||| |||| | |||||| | ||||||||| || || || || | || || || ||
Sbjct 59364 TTTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAG 59305
Query 27227 AGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259
|||||||||||||| ||||| |||| |||||
Sbjct 59304 GGTTTTCACAAAGATCTGCAT-GCTGAAAAAAA 59273
>seq899
Length=82215
Score = 96.9 bits (106), Expect = 3e-15
Identities = 169/243 (70%), Gaps = 5/243 (2%)
Strand=Plus/Minus
Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA--- 131800
|| |||||||| |||||||| ||||||| || | ||| | ||| || ||||||
Sbjct 23007 TCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTA 22948
Query 131801 CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCG 131860
|||||||| | || | ||| | ||||||||||||| || | ||| || ||| ||
Sbjct 22947 CCGCCTTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCA 22888
Query 131861 TTGGCGTTTCCATTGGTGCTCTTAAT-GTAGCTGCCATTGGCTCTGATTTTGTGAACGTT 131919
|| | | ||||| || | | ||| || | ||| | |||||||| ||||| |||||
Sbjct 22887 TTAGATGTGCCATTTGTTCCCGCAATCAGAGAT-CCAGTTGCTCTGATATTGTGCACGTT 22829
Query 131920 GAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGAT 131979
|| || || || ||| | |||||||| ||||| |||| | | ||||| |||||
Sbjct 22828 CAGACCTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGAT 22769
Query 131980 ACC 131982
||
Sbjct 22768 GCC 22766
>seq7056
Length=51435
Score = 93.3 bits (102), Expect = 4e-14
Identities = 155/221 (70%), Gaps = 5/221 (2%)
Strand=Plus/Plus
Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA--- 131800
|| |||||||| |||||||| ||||||| || | ||| | ||| || ||||||
Sbjct 22464 TCGAAAATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTA 22523
Query 131801 CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCG 131860
|||||||| | |||| ||| | ||||||||||||| || | ||| || ||| ||
Sbjct 22524 CCGCCTTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCA 22583
Query 131861 TTGGCGTTTCCATTGGTGCTCTTAATGTAGC-TGCCATTGGCTCTGATTTTGTGAACGTT 131919
|||| | ||||| || | | ||| ||| ||| | |||||||| ||||| |||||
Sbjct 22584 TTGGATGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTAGCTCTGATATTGTGCACGTT 22642
Query 131920 GAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATT 131960
|| || || || ||| | || ||||| || || ||||
Sbjct 22643 CAGACCTATTCCACCGGCACTCTTGGAGATCAGGGCACATT 22683
>seq8716
Length=186993
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 27103 GTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCT 27162
||||||| ||| | || || ||||| ||||| ||||| | || || ||||| ||||
Sbjct 74511 GTTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCT 74570
Query 27163 TGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCG 27222
|| |||| | || | || || | ||| ||||| || || || |||| ||| ||||
Sbjct 74571 TGGCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCG 74630
Query 27223 TCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258
| ||||| || || ||||||||||| || | ||||
Sbjct 74631 TAAGAGTCTTTACGAAGATTTGCATTACTACAAAAA 74666
>seq8587
Length=192155
Score = 84.2 bits (92), Expect = 2e-11
Identities = 111/153 (73%), Gaps = 1/153 (1%)
Strand=Plus/Plus
Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165
|||| ||| | || || ||||| ||||| || || | ||||| || || ||||||
Sbjct 141775 TACCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGG 141834
Query 27166 TTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225
||| | |||| | |||||| | ||||| ||||| || || |||| || || ||||
Sbjct 141835 CTTTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCA 141894
Query 27226 GAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258
||||||| || || || ||||||| |||| |||
Sbjct 141895 GAGTTTTGACGAAAATCTGCATAG-TGCTGAAA 141926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424867514661480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |