Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq8275 96.9 3e-15 seq899 96.9 3e-15 seq7056 93.3 4e-14 seq8716 84.2 2e-11 seq8587 84.2 2e-11 >seq8275 Length=204344 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27107 ACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166 |||||| | ||||| ||||| ||||| ||||| | || ||||| || |||||| Sbjct 60881 ACCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGC 60822 Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 ||| | | |||| | ||||| | ||||| ||||| | || |||| ||| || ||||| Sbjct 60821 TTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAG 60762 Query 27227 AGTTTTCACAAAGATTTGCAT 27247 ||||||||| ||||||||||| Sbjct 60761 AGTTTTCACGAAGATTTGCAT 60741 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 27107 ACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTT 27166 |||||| | || || || || |||||||| || | || || ||||| ||||| Sbjct 59424 ACCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGC 59365 Query 27167 TTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAG 27226 ||||| |||| | |||||| | ||||||||| || || || || | || || || || Sbjct 59364 TTTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAG 59305 Query 27227 AGTTTTCACAAAGATTTGCATAGCTGCTAAAAA 27259 |||||||||||||| ||||| |||| ||||| Sbjct 59304 GGTTTTCACAAAGATCTGCAT-GCTGAAAAAAA 59273 >seq899 Length=82215 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/243 (70%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA--- 131800 || |||||||| |||||||| ||||||| || | ||| | ||| || |||||| Sbjct 23007 TCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTA 22948 Query 131801 CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCG 131860 |||||||| | || | ||| | ||||||||||||| || | ||| || ||| || Sbjct 22947 CCGCCTTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCA 22888 Query 131861 TTGGCGTTTCCATTGGTGCTCTTAAT-GTAGCTGCCATTGGCTCTGATTTTGTGAACGTT 131919 || | | ||||| || | | ||| || | ||| | |||||||| ||||| ||||| Sbjct 22887 TTAGATGTGCCATTTGTTCCCGCAATCAGAGAT-CCAGTTGCTCTGATATTGTGCACGTT 22829 Query 131920 GAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGAT 131979 || || || || ||| | |||||||| ||||| |||| | | ||||| ||||| Sbjct 22828 CAGACCTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGAT 22769 Query 131980 ACC 131982 || Sbjct 22768 GCC 22766 >seq7056 Length=51435 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/221 (70%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 131744 TCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTTA--- 131800 || |||||||| |||||||| ||||||| || | ||| | ||| || |||||| Sbjct 22464 TCGAAAATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTA 22523 Query 131801 CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCG 131860 |||||||| | |||| ||| | ||||||||||||| || | ||| || ||| || Sbjct 22524 CCGCCTTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCA 22583 Query 131861 TTGGCGTTTCCATTGGTGCTCTTAATGTAGC-TGCCATTGGCTCTGATTTTGTGAACGTT 131919 |||| | ||||| || | | ||| ||| ||| | |||||||| ||||| ||||| Sbjct 22584 TTGGATGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTAGCTCTGATATTGTGCACGTT 22642 Query 131920 GAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCATT 131960 || || || || ||| | || ||||| || || |||| Sbjct 22643 CAGACCTATTCCACCGGCACTCTTGGAGATCAGGGCACATT 22683 >seq8716 Length=186993 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 27103 GTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCT 27162 ||||||| ||| | || || ||||| ||||| ||||| | || || ||||| |||| Sbjct 74511 GTTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCT 74570 Query 27163 TGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCG 27222 || |||| | || | || || | ||| ||||| || || || |||| ||| |||| Sbjct 74571 TGGCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCG 74630 Query 27223 TCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 | ||||| || || ||||||||||| || | |||| Sbjct 74631 TAAGAGTCTTTACGAAGATTTGCATTACTACAAAAA 74666 >seq8587 Length=192155 Score = 84.2 bits (92), Expect = 2e-11 Identities = 111/153 (73%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165 |||| ||| | || || ||||| ||||| || || | ||||| || || |||||| Sbjct 141775 TACCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGG 141834 Query 27166 TTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225 ||| | |||| | |||||| | ||||| ||||| || || |||| || || |||| Sbjct 141835 CTTTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCA 141894 Query 27226 GAGTTTTCACAAAGATTTGCATAGCTGCTAAAA 27258 ||||||| || || || ||||||| |||| ||| Sbjct 141895 GAGTTTTGACGAAAATCTGCATAG-TGCTGAAA 141926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424867514661480