Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq7056 100 4e-16
seq899 95.1 1e-14
>seq7056
Length=51435
Score = 100 bits (110), Expect = 4e-16
Identities = 197/291 (68%), Gaps = 3/291 (1%)
Strand=Plus/Plus
Query 119136 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCC 119192
|| || || ||||| ||||||||||| | |||| || ||| || | ||| |
Sbjct 22470 ATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTACCGCCT 22529
Query 119193 TGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGAT 119252
|||| ||||| | |||||| ||| |||| |||||||| ||||| | |||| ||||
Sbjct 22530 TGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCATTGGAT 22589
Query 119253 TGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCA 119312
||||||||| ||| ||| | || | | ||||||| || ||| | || || |||
Sbjct 22590 GTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGTTCAGACCT 22649
Query 119313 ATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 119372
|| || || || | ||| ||||| | || || | | | | | || |||| || ||| |
Sbjct 22650 ATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATGCCAGCA 22709
Query 119373 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423
||||| || | | ||| | |||||| || |||| ||| ||||||
Sbjct 22710 ATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTGTGGCCTG 22760
>seq899
Length=82215
Score = 95.1 bits (104), Expect = 1e-14
Identities = 170/248 (69%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 119136 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCC 119192
|| || || ||||||||||||||||| | || | || ||| || | ||| |
Sbjct 23001 ATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCCT 22942
Query 119193 TGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGAT 119252
|||| || || | |||||| ||| ||||||||||||| ||||| | |||| |||
Sbjct 22941 TGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGAT 22882
Query 119253 TGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCA 119312
||||||||| ||| ||| |||| | | ||||||| || ||| | || || |||
Sbjct 22881 GTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGTTCAGACCT 22822
Query 119313 ATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 119372
|| || || || | ||| ||||| | || || | | | | | || ||||||| ||| |
Sbjct 22821 ATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAGCA 22762
Query 119373 ATCGAGTC 119380
|| || ||
Sbjct 22761 ATGGAATC 22754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618335361367400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |