Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq7056 100 4e-16 seq899 95.1 1e-14 >seq7056 Length=51435 Score = 100 bits (110), Expect = 4e-16 Identities = 197/291 (68%), Gaps = 3/291 (1%) Strand=Plus/Plus Query 119136 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCC 119192 || || || ||||| ||||||||||| | |||| || ||| || | ||| | Sbjct 22470 ATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTATTACCGCCT 22529 Query 119193 TGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGAT 119252 |||| ||||| | |||||| ||| |||| |||||||| ||||| | |||| |||| Sbjct 22530 TGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGCCATTGGAT 22589 Query 119253 TGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCA 119312 ||||||||| ||| ||| | || | | ||||||| || ||| | || || ||| Sbjct 22590 GTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGTTCAGACCT 22649 Query 119313 ATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 119372 || || || || | ||| ||||| | || || | | | | | || |||| || ||| | Sbjct 22650 ATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAATGCCAGCA 22709 Query 119373 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 ||||| || | | ||| | |||||| || |||| ||| |||||| Sbjct 22710 ATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTGTGGCCTG 22760 >seq899 Length=82215 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/248 (69%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 119136 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCC 119192 || || || ||||||||||||||||| | || | || ||| || | ||| | Sbjct 23001 ATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTATTACCGCCT 22942 Query 119193 TGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGAT 119252 |||| || || | |||||| ||| ||||||||||||| ||||| | |||| ||| Sbjct 22941 TGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGCCATTAGAT 22882 Query 119253 TGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCA 119312 ||||||||| ||| ||| |||| | | ||||||| || ||| | || || ||| Sbjct 22881 GTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGTTCAGACCT 22822 Query 119313 ATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 119372 || || || || | ||| ||||| | || || | | | | | || ||||||| ||| | Sbjct 22821 ATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGATGCCAGCA 22762 Query 119373 ATCGAGTC 119380 || || || Sbjct 22761 ATGGAATC 22754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618335361367400