Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq8640 269 8e-67 seq8275 140 1e-27 seq8832 131 5e-25 seq8587 129 2e-24 seq9358 123 8e-23 seq7757 116 1e-20 seq8131 113 1e-19 seq8716 107 6e-18 seq9643 87.8 5e-12 >seq8640 Length=189999 Score = 269 bits (298), Expect = 8e-67 Identities = 673/1013 (66%), Gaps = 12/1013 (1%) Strand=Plus/Plus Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 ||||||||| | || |||||||| || || || || | || ||| || || |||||| Sbjct 71648 GATGCTGTTGTCACAGTACCAGCGTACTTCAACGACTCTCAACGTCAAGCTACCAAAGAT 71707 Query 349667 GCTGGCAGCA-TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGC 349725 || || |||| |||| || | ||||| || | || || || |||||||| ||||| || Sbjct 71708 GCAGG-AGCAATTGCTGGTCTCAATGTCCTTCGTATCATCAACGAACCCACCGCTGCTGC 71766 Query 349726 AATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTT 349785 || || || || || || || | | | | || ||| | || ||||| ||| | Sbjct 71767 TATCGCCTACGGTCTAGACAAGAAGGGAACCGGCGAGCGAAACGTGCTCATTTTCGATCT 71826 Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845 || || ||||| || ||||| || | || || |||| || ||||| |||||||| || Sbjct 71827 TGGAGGCGGTACCTTCGATGTGTCGATCCTTACCATTGAGGATGGAATCTTTGAAGTGAA 71886 Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCA 349905 | | || ||||| || || || ||||| ||||| || ||||| || ||| | || || Sbjct 71887 ATCTACAGCTGGAGACACCCACCTTGGAGGAGAGGACTTTGACAACCGTATGGTGAACCA 71946 Query 349906 TTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAGAGCAA 349964 || || ||||| ||| | |||| || | ||| | |||||| | || Sbjct 71947 CTTCGTCGCTGAATTCAAGAGG-AAGCACAAGAAGGATCTCAACACCAATCCTCGTGCTC 72005 Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024 |||| || || | ||||| || |||||||| |||||| || | |||||| | |||| Sbjct 72006 TGCGACGTCTTCGTACTGCTTGCGAACGTGCCAAGCGTACCCTTTCATCTTCGTCCCAGG 72065 Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084 | || || ||||||||||| || || || | ||||||| | ||||| |||| Sbjct 72066 CTTCGATCGAAATTGATTCACTCTTCGAGGGTATCGATTTCTACACTAACATTACTCGTG 72125 Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144 | || || || || | || |||||||| | | || ||||||||||| || || Sbjct 72126 CCCGATTCGAGGAGCTGTGCGCTGATCTTTTCCGTTCCACCATGGATCCTGTTGAGAAGT 72185 Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204 | | |||||| || ||| ||| | ||||| |||| | ||| | ||||| || | Sbjct 72186 CGCTGAGAGATGCTAAGATGGACAAGAGCCAGATCCATGATATCGTTCTTGTTGGAGGAT 72245 Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CT 350263 | || |||||||||||||| || || | |||||||| | || ||| ||||||| | Sbjct 72246 CAACTCGTATTCCAAAAGTGCAGAAGCTGCTATCTGATCTGTTCTCTGGAAAAGAACTCA 72305 Query 350264 TCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATT 350323 | || || || || || ||||| |||||||| || || || || ||||| || ||||| Sbjct 72306 ACAAG-TCGATCAACCCTGATGAGGCTGTTGCCTACGGAGCCGCAGTTCAAGCCGCTATT 72364 Query 350324 TTATCTGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCA 350380 | || || | ||| || | || | ||||| | || || ||||| | || Sbjct 72365 CTTTCCGGTGACAAG---TCGGAGGCTGTGCAGGATCTGCTCCTTCTCGATGTGGCGCCT 72421 Query 350381 CTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGT 350440 || || || || | ||||| |||| | |||||||| | | | || || || | Sbjct 72422 CTATCACTCGGTATCGAAACCGCTGGAGGTGTAATGACAGCTTTGATCAAGAGGAACACC 72481 Query 350441 ACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTA 350500 || | || || || | ||| || || | || | | || || ||||| | || Sbjct 72482 ACCATTCCAACGAAGACCAGCCAGACATTCACCACCTACTCTGACAACCAGCCTGGTGTG 72541 Query 350501 ACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAA 350560 || || || || ||||| |||||||| ||||| || || ||| ||||||| || Sbjct 72542 CTCATCCAGGTCTTCGAAGGAGAACGTGCAATGACTAAGGACAACAATCTACTTGGAAAA 72601 Query 350561 TTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGT 350613 || || || ||||||||| || ||||| || || || ||||| || Sbjct 72602 TTCGAGCTGTCTGGAATTCCACCTGCACCAAGAGGCGTACCGCAAATTGAGGT 72654 >seq8275 Length=204344 Score = 140 bits (154), Expect = 1e-27 Identities = 115/140 (82%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| || ||||||||||| || ||||||||||| ||||| ||||| || ||| Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGCT 59364 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | || || | |||||| || ||||| | |||||| |||||||| Sbjct 59363 TTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 59304 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| ||||| |||||||| Sbjct 59303 GTTTTCACAAAGATCTGCAT 59284 Score = 131 bits (144), Expect = 5e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| || || || |||||||| |||||||||||||| |||||||| |||||| Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || |||| ||| |||| || ||||| | |||| || ||||| ||||| Sbjct 61130 TTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAGA 61071 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || || |||||||| Sbjct 61070 GTTTTCACGAAGATCTGCAT 61051 Score = 129 bits (142), Expect = 2e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| || || ||||||||||| ||||||||||| ||||| ||||| ||||| Sbjct 60230 CCTGCAAAGATAAGCCGCTGCTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTAGCC 60171 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | |||||||| ||||| || | ||||| |||||||| || | Sbjct 60170 TTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAAC 60111 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||| ||||||||| Sbjct 60110 GTCTTCACAAAGATCTGCATT 60090 Score = 109 bits (120), Expect = 2e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || |||||||| || || |||||||| || || ||||||||||| |||||||| || ||| Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 60821 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || ||||| | || || | ||| ||||| | ||||| || ||||| || || Sbjct 60820 TTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAGA 60761 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || || || ||||| Sbjct 60760 GTTTTCACGAAGATTTGCAT 60741 Score = 91.5 bits (100), Expect = 4e-13 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || ||||| | | || ||||||||||| |||||||| ||||||||||||| Sbjct 60747 TTTGCATGCCTCCACGAAGACGAAGTACAAGATGAAGCGTAGACTCCTTTTGAATATTAT 60688 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 |||| || | ||||| |||||||| || || ||||| ||||||| Sbjct 60687 AATCCGAGAGAGTTCGTCCATCTTCCAGCTGCTTTCC-TAAAAGATT 60642 >seq8832 Length=33236 Score = 131 bits (144), Expect = 5e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| || ||||||||||| || |||||||| || || || ||||| || ||| Sbjct 24478 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 24537 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | ||||| | ||| ||||||||||||| |||||||| || || Sbjct 24538 TTAACATTTTCAATGGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTCTTTCCTGTCAGA 24597 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||||||||| Sbjct 24598 GTTTTGACGAAAATCTGCAT 24617 Score = 123 bits (136), Expect = 8e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| | || ||||| || || ||||||||||| |||||||||||||| || Sbjct 23287 CCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCC 23346 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | ||| |||| ||||||||| || || | |||||||| || || Sbjct 23347 TTTACATTTTCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGA 23406 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || || |||||| Sbjct 23407 GTCTTGACGAAGATTTGCATT 23427 Score = 120 bits (132), Expect = 9e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| ||||| | ||||||||||| || |||||||||||||||||||| || || || Sbjct 22986 CCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 23045 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || || | || || | ||| |||||||| || | ||||||||| || || Sbjct 23046 TTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGAGG 23105 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||| ||||||||| Sbjct 23106 GTCTTGACAAAGATCTGCATT 23126 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| | ||||||||||| || ||||||||||| || ||||| || || || Sbjct 24170 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 24229 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | ||| || | ||| ||||| || || | |||||||| || || Sbjct 24230 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 24289 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || ||||||||| Sbjct 24290 GTCTTAACGAAGATCTGCATT 24310 Score = 111 bits (122), Expect = 5e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||| ||||| || || |||||||| || ||||||||||| || ||||| || || || Sbjct 23876 CCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 23935 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | ||| || | ||| ||||| || || | |||||||| || || Sbjct 23936 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 23995 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || ||||||||| Sbjct 23996 GTCTTAACGAAGATCTGCATT 24016 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || || ||||| || || ||||||||||| || ||||| || || || Sbjct 22394 CCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 22453 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || || | ||| || | ||| ||||| || || | |||||||| || || Sbjct 22454 TTCACGTTTTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 22513 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || ||||||||| Sbjct 22514 GTCTTGACGAAGATCTGCATT 22534 >seq8587 Length=192155 Score = 129 bits (142), Expect = 2e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| | ||||||||||| || ||||| |||||||| ||||| || || || Sbjct 141470 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 141529 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | ||| || | ||| |||||||| |||| |||||||| || || Sbjct 141530 TTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGA 141589 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||| ||||||||| Sbjct 141590 GTCTTGACAAAGATCTGCATT 141610 Score = 122 bits (134), Expect = 3e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| || || |||||||| || |||||||| || || || ||||| || ||| Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 141836 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | ||||| | ||| |||||||| |||| |||||||| || || Sbjct 141837 TTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCAGA 141896 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||||||||| Sbjct 141897 GTTTTGACGAAAATCTGCAT 141916 Score = 120 bits (132), Expect = 9e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| | || ||||| || || ||||||||||| ||||| |||||||| || Sbjct 140587 CCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCC 140646 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | ||| |||| |||||||| || || | ||||||||| || || Sbjct 140647 TTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAAGG 140706 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || || |||||| Sbjct 140707 GTCTTGACGAAGATTTGCATT 140727 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| | ||||||||||| || |||||||||||||||||||| || || || Sbjct 140289 CCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 140348 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || ||||| | || || | ||| ||||| || |||| ||||||||| || || Sbjct 140349 TTGACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGAGG 140408 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || ||||||||| Sbjct 140409 GTCTTCACGAATATCTGCATT 140429 Score = 114 bits (126), Expect = 4e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| | || ||||| || || |||||||| || || |||||||||||||| Sbjct 140882 CCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAGCC 140941 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || ||||| | ||| || | ||| |||||||| |||| ||||||||| || || Sbjct 140942 TTGACGTTCTCAATGGTATCCGAAGCTTCGACTTCAAGGGTAATTGTCTTTCCAGTAAGG 141001 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || || || ||||||||| Sbjct 141002 GTCTTGACGAAGATCTGCATT 141022 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || || ||||| | | |||||||| || ||||||||||| || ||||| || || || Sbjct 141178 CCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 141237 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || ||||||| ||| || | ||| ||||| || |||| |||||||| || || Sbjct 141238 TTCACGTTTTCAATCGTATCCGAGGCTTCGACTTCGAGAGTAATGGTCTTTCCAGTGAGG 141297 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || ||||| ||||||||| Sbjct 141298 GTCTTGACAAAGATCTGCATT 141318 Score = 104 bits (114), Expect = 7e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 ||||||||||| || || ||||| || || ||||||||||| || || ||||| || ||| Sbjct 139693 CCAGCAAAGATCAGTCGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCT 139752 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || || || || || | |||||| | |||||||| || || | ||||| || || || Sbjct 139753 TTCACGTTCTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 139812 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 139813 GTCTTGACGAAGATCTGCAT 139832 >seq9358 Length=25477 Score = 123 bits (136), Expect = 8e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590 ||| ||||| || || | ||||| | | |||||||| || ||||||||| | ||| | Sbjct 19171 ACCGGAAGAGATCTCTGCCATGGTCCTCGGAAAAATGAAAGAGATTGCTGAATCGTATCT 19112 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 || | ||| | | || || | || |||||||| ||||| ||||| || ||||| Sbjct 19111 TGGAAAGGAAGTGAAGCACGCGGTCGTGACGGTACCAGCTTATTTCAATGACGCTCAGCG 19052 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 || || |||||||| || | ||||| || ||||| ||| | | || || ||||| Sbjct 19051 ACAGGCCACCAAAGATGCGGGAACGATTGCTGGATTAAACGTTGTTCGTATCATCAATGA 18992 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 ||| |||||||| || || ||||||||||||||||| Sbjct 18991 ACCAACTGCTGCTGCTATCGCATATGGGCTTGATAA 18956 Score = 93.3 bits (102), Expect = 1e-13 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||||||||| || || || || ||||||||||| || ||||| || ||||||| | Sbjct 18078 CAGCTTGAACTGCAGCTCCGTAAGCAACAGCTTCGTCGGGGTTGATACCACGAGATGGCT 18137 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 |||||||||| || ||||| | || |||||| | |||||| || | |||||||||| Sbjct 18138 CTTTGCCATTGAAGAATTCCTTGATCAGTTGTTGCACTTTTGGTATGCGGGTTGAACCAC 18197 Query 183370 CGAC 183373 | || Sbjct 18198 CAAC 18201 >seq7757 Length=212262 Score = 116 bits (128), Expect = 1e-20 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 349520 AAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCT 349579 ||||| ||| |||||||| ||||| | ||||| || |||||||||||||| ||| Sbjct 115505 AAACAGTTTGCCCCCGAAGAGATTTCCGCTATGGTCTTGACGAAAATGAAGGAAATCGCT 115564 Query 349580 GAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAAT 349639 ||| | ||| | || | ||| | | || ||| |||| ||||| || || || || Sbjct 115565 GAATCCTATCTCGGCAAGGAAGTGAAGCACGCCGTTGTTACCGTACCGGCTTACTTCAAC 115624 Query 349640 GATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGA 349699 ||||| || ||| |||||||| || || || | || || || ||||||||| | || Sbjct 115625 GATGCTCAACGTCAAGCAACAAAGGACGCAGGAACGATCGCTGGTTTAAATGTTGTCCGA 115684 Query 349700 ATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 || || || || ||||| ||||| || || || || || ||||| || Sbjct 115685 ATTATCAACGAGCCCACCGCTGCCGCTATCGCCTACGGTCTTGACAA 115731 Score = 87.8 bits (96), Expect = 5e-12 Identities = 95/124 (77%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 350195 GTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCT--GAGTTTTTTAATG 350252 ||||| |||||||| ||||| || ||||| ||||| | |||| || || ||||| | Sbjct 116866 GTTGGAGGTTCTACTCGTATCCCGAAAGTACAACAACT--TATCAAGGACTTCTTTAACG 116923 Query 350253 GCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTC 350312 | |||||||| ||| | || ||||| ||||||||||| || || ||||||||||| | Sbjct 116924 GTAAAGAACCATCTCGCGGTATCAATCCCGATGAAGCTGTAGCTTACGGTGCTGCTGTAC 116983 Query 350313 AGGC 350316 | || Sbjct 116984 AAGC 116987 >seq8131 Length=46037 Score = 113 bits (124), Expect = 1e-19 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 140585 TTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATC 140644 |||||| || || || ||||| || || ||||||||||| ||||||||||| ||||| Sbjct 31574 TTCAAGAAATTCACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATC 31633 Query 140645 CTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704 |||||| || || || ||||| || || | |||||| | ||||| || || || | || Sbjct 31634 CTGAATCTTGGCCTTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGT 31693 Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCATTA 140739 ||||| || || || ||||| || || ||||||| Sbjct 31694 TTTTCCCGTAAGAGTCTTTACGAAGATTTGCATTA 31728 >seq8716 Length=186993 Score = 107 bits (118), Expect = 6e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 140593 GTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTT 140652 |||| || || ||||| || || ||||||||||| || |||||||| ||||||||||| | Sbjct 74511 GTTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCT 74570 Query 140653 TAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGG 140712 | || || ||||| || || | ||| || | ||||| || || || | || ||||| | Sbjct 74571 TGGCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCG 74630 Query 140713 TTAGTGTTTTTACAAAAATCTGCATTA 140739 | || || ||||| || || ||||||| Sbjct 74631 TAAGAGTCTTTACGAAGATTTGCATTA 74657 >seq9643 Length=160280 Score = 87.8 bits (96), Expect = 5e-12 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553 ||||||||| | |||||||| || | ||| | |||||||| ||||| |||| ||||| Sbjct 9980 ACACCAGCATAATGGAAAGTGTTCAAAGTCATTTGAGTAGCCGGCTCTCCAAGAGACTGA 9921 Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGA-CAATAGC 377594 ||||| | | ||||||||||||| ||||| |||| |||| || Sbjct 9920 GCTGCTAGAGCGCCAACCATTTCGCCAGG-TTGAGCAATGGC 9880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515003665645745