Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq8640 269 8e-67
seq8275 140 1e-27
seq8832 131 5e-25
seq8587 129 2e-24
seq9358 123 8e-23
seq7757 116 1e-20
seq8131 113 1e-19
seq8716 107 6e-18
seq9643 87.8 5e-12
>seq8640
Length=189999
Score = 269 bits (298), Expect = 8e-67
Identities = 673/1013 (66%), Gaps = 12/1013 (1%)
Strand=Plus/Plus
Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666
||||||||| | || |||||||| || || || || | || ||| || || ||||||
Sbjct 71648 GATGCTGTTGTCACAGTACCAGCGTACTTCAACGACTCTCAACGTCAAGCTACCAAAGAT 71707
Query 349667 GCTGGCAGCA-TTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGC 349725
|| || |||| |||| || | ||||| || | || || || |||||||| ||||| ||
Sbjct 71708 GCAGG-AGCAATTGCTGGTCTCAATGTCCTTCGTATCATCAACGAACCCACCGCTGCTGC 71766
Query 349726 AATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTT 349785
|| || || || || || || | | | | || ||| | || ||||| ||| |
Sbjct 71767 TATCGCCTACGGTCTAGACAAGAAGGGAACCGGCGAGCGAAACGTGCTCATTTTCGATCT 71826
Query 349786 AGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAA 349845
|| || ||||| || ||||| || | || || |||| || ||||| |||||||| ||
Sbjct 71827 TGGAGGCGGTACCTTCGATGTGTCGATCCTTACCATTGAGGATGGAATCTTTGAAGTGAA 71886
Query 349846 AGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCA 349905
| | || ||||| || || || ||||| ||||| || ||||| || ||| | || ||
Sbjct 71887 ATCTACAGCTGGAGACACCCACCTTGGAGGAGAGGACTTTGACAACCGTATGGTGAACCA 71946
Query 349906 TTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATATTGGAGATAATCCTAGAGCAA 349964
|| || ||||| ||| | |||| || | ||| | |||||| | ||
Sbjct 71947 CTTCGTCGCTGAATTCAAGAGG-AAGCACAAGAAGGATCTCAACACCAATCCTCGTGCTC 72005
Query 349965 TGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAA 350024
|||| || || | ||||| || |||||||| |||||| || | |||||| | ||||
Sbjct 72006 TGCGACGTCTTCGTACTGCTTGCGAACGTGCCAAGCGTACCCTTTCATCTTCGTCCCAGG 72065
Query 350025 CCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTG 350084
| || || ||||||||||| || || || | ||||||| | ||||| ||||
Sbjct 72066 CTTCGATCGAAATTGATTCACTCTTCGAGGGTATCGATTTCTACACTAACATTACTCGTG 72125
Query 350085 CTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAG 350144
| || || || || | || |||||||| | | || ||||||||||| || ||
Sbjct 72126 CCCGATTCGAGGAGCTGTGCGCTGATCTTTTCCGTTCCACCATGGATCCTGTTGAGAAGT 72185
Query 350145 TATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTT 350204
| | |||||| || ||| ||| | ||||| |||| | ||| | ||||| || |
Sbjct 72186 CGCTGAGAGATGCTAAGATGGACAAGAGCCAGATCCATGATATCGTTCTTGTTGGAGGAT 72245
Query 350205 CTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CT 350263
| || |||||||||||||| || || | |||||||| | || ||| ||||||| |
Sbjct 72246 CAACTCGTATTCCAAAAGTGCAGAAGCTGCTATCTGATCTGTTCTCTGGAAAAGAACTCA 72305
Query 350264 TCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATT 350323
| || || || || || ||||| |||||||| || || || || ||||| || |||||
Sbjct 72306 ACAAG-TCGATCAACCCTGATGAGGCTGTTGCCTACGGAGCCGCAGTTCAAGCCGCTATT 72364
Query 350324 TTATCTGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCA 350380
| || || | ||| || | || | ||||| | || || ||||| | ||
Sbjct 72365 CTTTCCGGTGACAAG---TCGGAGGCTGTGCAGGATCTGCTCCTTCTCGATGTGGCGCCT 72421
Query 350381 CTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGT 350440
|| || || || | ||||| |||| | |||||||| | | | || || || |
Sbjct 72422 CTATCACTCGGTATCGAAACCGCTGGAGGTGTAATGACAGCTTTGATCAAGAGGAACACC 72481
Query 350441 ACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTA 350500
|| | || || || | ||| || || | || | | || || ||||| | ||
Sbjct 72482 ACCATTCCAACGAAGACCAGCCAGACATTCACCACCTACTCTGACAACCAGCCTGGTGTG 72541
Query 350501 ACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAA 350560
|| || || || ||||| |||||||| ||||| || || ||| ||||||| ||
Sbjct 72542 CTCATCCAGGTCTTCGAAGGAGAACGTGCAATGACTAAGGACAACAATCTACTTGGAAAA 72601
Query 350561 TTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGT 350613
|| || || ||||||||| || ||||| || || || ||||| ||
Sbjct 72602 TTCGAGCTGTCTGGAATTCCACCTGCACCAAGAGGCGTACCGCAAATTGAGGT 72654
>seq8275
Length=204344
Score = 140 bits (154), Expect = 1e-27
Identities = 115/140 (82%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| |||||||| || ||||||||||| || ||||||||||| ||||| ||||| || |||
Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTTTGCT 59364
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | || || | |||||| || ||||| | |||||| ||||||||
Sbjct 59363 TTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 59304
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| ||||| ||||||||
Sbjct 59303 GTTTTCACAAAGATCTGCAT 59284
Score = 131 bits (144), Expect = 5e-25
Identities = 113/140 (81%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| |||||||| || || || |||||||| |||||||||||||| |||||||| ||||||
Sbjct 61190 CCGGCAAAGATGAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 61131
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| || |||| ||| |||| || ||||| | |||| || ||||| |||||
Sbjct 61130 TTCACATTTTCGATCGTATCGGATGCCTCCACTTCCAAAGTAATAGTTTTTCCAGTTAGA 61071
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| || || ||||||||
Sbjct 61070 GTTTTCACGAAGATCTGCAT 61051
Score = 129 bits (142), Expect = 2e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| |||||||| || || ||||||||||| ||||||||||| ||||| ||||| |||||
Sbjct 60230 CCTGCAAAGATAAGCCGCTGCTGATCAGGTGGAATTCCTTCCTTATCTTGAATCTTAGCC 60171
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| || || | |||||||| ||||| || | ||||| |||||||| || |
Sbjct 60170 TTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAAC 60111
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || ||||| |||||||||
Sbjct 60110 GTCTTCACAAAGATCTGCATT 60090
Score = 109 bits (120), Expect = 2e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| |||||||| || || |||||||| || || ||||||||||| |||||||| || |||
Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 60821
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || ||||| | || || | ||| ||||| | ||||| || ||||| || ||
Sbjct 60820 TTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAGA 60761
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| || || || |||||
Sbjct 60760 GTTTTCACGAAGATTTGCAT 60741
Score = 91.5 bits (100), Expect = 4e-13
Identities = 85/107 (79%), Gaps = 1/107 (1%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||| || ||||| | | || ||||||||||| |||||||| |||||||||||||
Sbjct 60747 TTTGCATGCCTCCACGAAGACGAAGTACAAGATGAAGCGTAGACTCCTTTTGAATATTAT 60688
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609
|||| || | ||||| |||||||| || || ||||| |||||||
Sbjct 60687 AATCCGAGAGAGTTCGTCCATCTTCCAGCTGCTTTCC-TAAAAGATT 60642
>seq8832
Length=33236
Score = 131 bits (144), Expect = 5e-25
Identities = 113/140 (81%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| || ||||| || ||||||||||| || |||||||| || || || ||||| || |||
Sbjct 24478 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 24537
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | ||||| | ||| ||||||||||||| |||||||| || ||
Sbjct 24538 TTAACATTTTCAATGGTGTCAGAAGCTTCGACTTCAAGTGTAATAGTCTTTCCTGTCAGA 24597
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| || |||||||||||
Sbjct 24598 GTTTTGACGAAAATCTGCAT 24617
Score = 123 bits (136), Expect = 8e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
||||||||||| | || ||||| || || ||||||||||| |||||||||||||| ||
Sbjct 23287 CCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCC 23346
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || || | ||| |||| ||||||||| || || | |||||||| || ||
Sbjct 23347 TTTACATTTTCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGA 23406
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || || || ||||||
Sbjct 23407 GTCTTGACGAAGATTTGCATT 23427
Score = 120 bits (132), Expect = 9e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
||||| ||||| | ||||||||||| || |||||||||||||||||||| || || ||
Sbjct 22986 CCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 23045
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || || || | || || | ||| |||||||| || | ||||||||| || ||
Sbjct 23046 TTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGAGG 23105
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || ||||| |||||||||
Sbjct 23106 GTCTTGACAAAGATCTGCATT 23126
Score = 114 bits (126), Expect = 4e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
||||||||||| | ||||||||||| || ||||||||||| || ||||| || || ||
Sbjct 24170 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 24229
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | ||| || | ||| ||||| || || | |||||||| || ||
Sbjct 24230 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 24289
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || || |||||||||
Sbjct 24290 GTCTTAACGAAGATCTGCATT 24310
Score = 111 bits (122), Expect = 5e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
||||| ||||| || || |||||||| || ||||||||||| || ||||| || || ||
Sbjct 23876 CCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 23935
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | ||| || | ||| ||||| || || | |||||||| || ||
Sbjct 23936 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 23995
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || || |||||||||
Sbjct 23996 GTCTTAACGAAGATCTGCATT 24016
Score = 102 bits (112), Expect = 2e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
||||||||||| || || ||||| || || ||||||||||| || ||||| || || ||
Sbjct 22394 CCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 22453
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || || || | ||| || | ||| ||||| || || | |||||||| || ||
Sbjct 22454 TTCACGTTTTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 22513
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || || |||||||||
Sbjct 22514 GTCTTGACGAAGATCTGCATT 22534
>seq8587
Length=192155
Score = 129 bits (142), Expect = 2e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
||||||||||| | ||||||||||| || ||||| |||||||| ||||| || || ||
Sbjct 141470 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 141529
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | ||| || | ||| |||||||| |||| |||||||| || ||
Sbjct 141530 TTGACATTTTCAATTGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGA 141589
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || ||||| |||||||||
Sbjct 141590 GTCTTGACAAAGATCTGCATT 141610
Score = 122 bits (134), Expect = 3e-22
Identities = 111/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| || ||||| || || |||||||| || |||||||| || || || ||||| || |||
Sbjct 141777 CCTGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 141836
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | ||||| | ||| |||||||| |||| |||||||| || ||
Sbjct 141837 TTAACATTTTCAATAGTGTCAGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTCAGA 141896
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| || |||||||||||
Sbjct 141897 GTTTTGACGAAAATCTGCAT 141916
Score = 120 bits (132), Expect = 9e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
||||||||||| | || ||||| || || ||||||||||| ||||| |||||||| ||
Sbjct 140587 CCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCC 140646
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || || | ||| |||| |||||||| || || | ||||||||| || ||
Sbjct 140647 TTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAAGG 140706
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || || || ||||||
Sbjct 140707 GTCTTGACGAAGATTTGCATT 140727
Score = 114 bits (126), Expect = 4e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| || ||||| | ||||||||||| || |||||||||||||||||||| || || ||
Sbjct 140289 CCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 140348
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || ||||| | || || | ||| ||||| || |||| ||||||||| || ||
Sbjct 140349 TTGACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGAGG 140408
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || || |||||||||
Sbjct 140409 GTCTTCACGAATATCTGCATT 140429
Score = 114 bits (126), Expect = 4e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| || ||||| | || ||||| || || |||||||| || || ||||||||||||||
Sbjct 140882 CCTGCGAAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAGCC 140941
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || ||||| | ||| || | ||| |||||||| |||| ||||||||| || ||
Sbjct 140942 TTGACGTTCTCAATGGTATCCGAAGCTTCGACTTCAAGGGTAATTGTCTTTCCAGTAAGG 141001
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || || |||||||||
Sbjct 141002 GTCTTGACGAAGATCTGCATT 141022
Score = 105 bits (116), Expect = 2e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|| || ||||| | | |||||||| || ||||||||||| || ||||| || || ||
Sbjct 141178 CCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 141237
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || ||||||| ||| || | ||| ||||| || |||| |||||||| || ||
Sbjct 141238 TTCACGTTTTCAATCGTATCCGAGGCTTCGACTTCGAGAGTAATGGTCTTTCCAGTGAGG 141297
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || ||||| |||||||||
Sbjct 141298 GTCTTGACAAAGATCTGCATT 141318
Score = 104 bits (114), Expect = 7e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
||||||||||| || || ||||| || || ||||||||||| || || ||||| || |||
Sbjct 139693 CCAGCAAAGATCAGTCGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCT 139752
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| || || || || | |||||| | |||||||| || || | ||||| || || ||
Sbjct 139753 TTCACGTTCTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 139812
Query 140718 GTTTTTACAAAAATCTGCAT 140737
|| || || || ||||||||
Sbjct 139813 GTCTTGACGAAGATCTGCAT 139832
>seq9358
Length=25477
Score = 123 bits (136), Expect = 8e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590
||| ||||| || || | ||||| | | |||||||| || ||||||||| | ||| |
Sbjct 19171 ACCGGAAGAGATCTCTGCCATGGTCCTCGGAAAAATGAAAGAGATTGCTGAATCGTATCT 19112
Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650
|| | ||| | | || || | || |||||||| ||||| ||||| || |||||
Sbjct 19111 TGGAAAGGAAGTGAAGCACGCGGTCGTGACGGTACCAGCTTATTTCAATGACGCTCAGCG 19052
Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710
|| || |||||||| || | ||||| || ||||| ||| | | || || |||||
Sbjct 19051 ACAGGCCACCAAAGATGCGGGAACGATTGCTGGATTAAACGTTGTTCGTATCATCAATGA 18992
Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746
||| |||||||| || || |||||||||||||||||
Sbjct 18991 ACCAACTGCTGCTGCTATCGCATATGGGCTTGATAA 18956
Score = 93.3 bits (102), Expect = 1e-13
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309
|||||||||| || || || || ||||||||||| || ||||| || ||||||| |
Sbjct 18078 CAGCTTGAACTGCAGCTCCGTAAGCAACAGCTTCGTCGGGGTTGATACCACGAGATGGCT 18137
Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369
|||||||||| || ||||| | || |||||| | |||||| || | ||||||||||
Sbjct 18138 CTTTGCCATTGAAGAATTCCTTGATCAGTTGTTGCACTTTTGGTATGCGGGTTGAACCAC 18197
Query 183370 CGAC 183373
| ||
Sbjct 18198 CAAC 18201
>seq7757
Length=212262
Score = 116 bits (128), Expect = 1e-20
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 349520 AAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCT 349579
||||| ||| |||||||| ||||| | ||||| || |||||||||||||| |||
Sbjct 115505 AAACAGTTTGCCCCCGAAGAGATTTCCGCTATGGTCTTGACGAAAATGAAGGAAATCGCT 115564
Query 349580 GAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAAT 349639
||| | ||| | || | ||| | | || ||| |||| ||||| || || || ||
Sbjct 115565 GAATCCTATCTCGGCAAGGAAGTGAAGCACGCCGTTGTTACCGTACCGGCTTACTTCAAC 115624
Query 349640 GATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGA 349699
||||| || ||| |||||||| || || || | || || || ||||||||| | ||
Sbjct 115625 GATGCTCAACGTCAAGCAACAAAGGACGCAGGAACGATCGCTGGTTTAAATGTTGTCCGA 115684
Query 349700 ATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746
|| || || || ||||| ||||| || || || || || ||||| ||
Sbjct 115685 ATTATCAACGAGCCCACCGCTGCCGCTATCGCCTACGGTCTTGACAA 115731
Score = 87.8 bits (96), Expect = 5e-12
Identities = 95/124 (77%), Gaps = 4/124 (3%)
Strand=Plus/Plus
Query 350195 GTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCT--GAGTTTTTTAATG 350252
||||| |||||||| ||||| || ||||| ||||| | |||| || || ||||| |
Sbjct 116866 GTTGGAGGTTCTACTCGTATCCCGAAAGTACAACAACT--TATCAAGGACTTCTTTAACG 116923
Query 350253 GCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTC 350312
| |||||||| ||| | || ||||| ||||||||||| || || ||||||||||| |
Sbjct 116924 GTAAAGAACCATCTCGCGGTATCAATCCCGATGAAGCTGTAGCTTACGGTGCTGCTGTAC 116983
Query 350313 AGGC 350316
| ||
Sbjct 116984 AAGC 116987
>seq8131
Length=46037
Score = 113 bits (124), Expect = 1e-19
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 140585 TTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATC 140644
|||||| || || || ||||| || || ||||||||||| ||||||||||| |||||
Sbjct 31574 TTCAAGAAATTCACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATC 31633
Query 140645 CTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGT 140704
|||||| || || || ||||| || || | |||||| | ||||| || || || | ||
Sbjct 31634 CTGAATCTTGGCCTTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGT 31693
Query 140705 CTTTCCGGTTAGTGTTTTTACAAAAATCTGCATTA 140739
||||| || || || ||||| || || |||||||
Sbjct 31694 TTTTCCCGTAAGAGTCTTTACGAAGATTTGCATTA 31728
>seq8716
Length=186993
Score = 107 bits (118), Expect = 6e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 140593 GTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTT 140652
|||| || || ||||| || || ||||||||||| || |||||||| ||||||||||| |
Sbjct 74511 GTTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCT 74570
Query 140653 TAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGG 140712
| || || ||||| || || | ||| || | ||||| || || || | || ||||| |
Sbjct 74571 TGGCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCG 74630
Query 140713 TTAGTGTTTTTACAAAAATCTGCATTA 140739
| || || ||||| || || |||||||
Sbjct 74631 TAAGAGTCTTTACGAAGATTTGCATTA 74657
>seq9643
Length=160280
Score = 87.8 bits (96), Expect = 5e-12
Identities = 82/102 (80%), Gaps = 2/102 (2%)
Strand=Plus/Minus
Query 377494 ACACCAGCAAAGTGGAAAGTATTAAGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGC 377553
||||||||| | |||||||| || | ||| | |||||||| ||||| |||| |||||
Sbjct 9980 ACACCAGCATAATGGAAAGTGTTCAAAGTCATTTGAGTAGCCGGCTCTCCAAGAGACTGA 9921
Query 377554 GCTGCAATAACGCCAACCATTTCTCCAGGATTGA-CAATAGC 377594
||||| | | ||||||||||||| ||||| |||| |||| ||
Sbjct 9920 GCTGCTAGAGCGCCAACCATTTCGCCAGG-TTGAGCAATGGC 9880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515003665645745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |