Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq8832 141 1e-28 seq8587 141 1e-28 seq8716 118 1e-21 seq8131 118 1e-21 seq8275 104 3e-17 >seq8832 Length=33236 Score = 141 bits (156), Expect = 1e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| ||||| || ||||| || ||||| || ||||| || Sbjct 23427 AATGCAAATCTTCGTCAAGACTCTTACTGGAAAGACGATCACTCTCGAAGTTGAAGCATC 23368 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | ||||| ||||||||||| ||||| |||||||| |||||||| Sbjct 23367 CGATACCATCGAAAATGTAAAGGCCAAAATTCAGGATAAGGAAGGAATTCCACCAGACCA 23308 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || |||||||||| Sbjct 23307 GCAGCGATTGATCTTTGCTGGTA 23285 Score = 116 bits (128), Expect = 4e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| || || || ||||| || || || || || || | Sbjct 22534 AATGCAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTC 22475 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | ||| ||||||| || || ||||||||||| |||||||| |||||||| Sbjct 22474 CGATACCATCGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 22415 Query 27525 GCAGCGTCTAATTTTTGCTGGT 27546 |||||| || || ||||||||| Sbjct 22414 GCAGCGACTCATCTTTGCTGGT 22393 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || || ||||| || || || || || || | Sbjct 24016 AATGCAGATCTTCGTTAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTC 23957 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| ||||||| || || ||||||||||| |||||||| ||||| || Sbjct 23956 GGATACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCA 23897 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| || || || ||||||| Sbjct 23896 GCAGCGACTGATCTTCGCTGGTA 23874 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || || || || ||||||||||| ||||| || || | | Sbjct 24617 ATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACTATTACACTTGAAGTCGAAGCTTCT 24558 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | || || || ||||| ||||||||||||||||| ||||| ||| Sbjct 24557 GACACCATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 24498 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || || || || || || |||| Sbjct 24497 CAACGACTGATCTTCGCAGGTA 24476 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || || || |||||| | Sbjct 23723 AATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTC 23664 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || | ||||| || ||||||||||| ||||| ||||| |||||||| Sbjct 23663 CGATACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAAGAGGGGATTCCCCCAGACCA 23604 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || || || |||| Sbjct 23603 GCAGCGATTGATCTTCGCAGGTA 23581 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || || ||||| || || || || || || | Sbjct 24310 AATGCAGATCTTCGTTAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTC 24251 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| ||||||| || || ||||||||||| |||||||| ||||| || Sbjct 24250 GGATACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCA 24191 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| || | || |||||||||| Sbjct 24190 GCAACGATTGATCTTTGCTGGTA 24168 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || ||||| || || ||||| || || | Sbjct 23126 AATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAAGTCGAAGCTTC 23067 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | ||||| || || ||||| || || |||||||| ||||| || Sbjct 23066 GGACACCATCGAAAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGATCA 23007 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| || | || || ||||||| Sbjct 23006 GCAACGATTGATCTTCGCTGGTA 22984 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || || ||||||||||||| || ||||| ||||||| || ||||||||||||| || Sbjct 22918 GGAAAACAACTCGAGGATGGACGAACCCTCTCAGACTACAACATCCAAAAGGAATCAACC 22859 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||| ||||| | || ||||| |||||| Sbjct 22858 CTTCACCTAGTTCTTCGACTTCGTGGTGGA 22829 >seq8587 Length=192155 Score = 141 bits (156), Expect = 1e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| |||||||| ||||| || ||||| || ||||| || |||||| || Sbjct 140727 AATGCAAATCTTCGTCAAGACCCTTACTGGAAAGACAATCACTCTCGAAGTTGAGGCATC 140668 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | |||| | ||||| |||||||| || ||||| |||||||| |||||||| Sbjct 140667 CGATACCATCGAAAATGTAAAGGCCAAAATTCAAGATAAGGAAGGAATTCCCCCAGACCA 140608 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || |||||||||| Sbjct 140607 GCAGCGATTGATCTTTGCTGGTA 140585 Score = 140 bits (154), Expect = 4e-28 Identities = 118/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||||||||| ||||| || ||||| || ||||| || |||||| | Sbjct 140132 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTCTCGAAGTTGAGGCTTC 140073 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| |||| ||||||| || || |||||||| || || ||||||||||| || Sbjct 140072 CGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCA 140013 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||||| | || || ||||||||| Sbjct 140012 GCAGCGTTTGATCTTCGCTGGTAAG 139988 Score = 132 bits (146), Expect = 5e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| |||||||| ||||| || ||||| ||||| ||||| || || | Sbjct 141022 AATGCAGATCTTCGTCAAGACCCTTACTGGAAAGACAATTACCCTTGAAGTCGAAGCTTC 140963 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||||| || | |||||||||||||||||||||||||||||||| |||||||| Sbjct 140962 GGATACCATTGAGAACGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCCCCAGACCA 140903 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||||| | || || || |||| Sbjct 140902 GCAGCGATTGATCTTCGCAGGTA 140880 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| ||||| || ||||||||||||||||| || || | Sbjct 141610 AATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACTATTACTCTTGAAGTCGAAGCCTC 141551 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| |||| | ||||| || || |||||||| || || ||||| ||||| || Sbjct 141550 AGATACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCCCCAGATCA 141491 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| || | || |||||||||| Sbjct 141490 GCAACGATTGATCTTTGCTGGTA 141468 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || || |||||| | | Sbjct 139832 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTCT 139773 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || |||| || || ||||| |||||||| |||||||| || |||||| Sbjct 139772 GATACCATCGAGAACGTGAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCGGACCAG 139713 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| || || ||||||||| Sbjct 139712 CAGCGACTGATCTTTGCTGGT 139692 Score = 109 bits (120), Expect = 6e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||||||||| || || || ||||| |||||||| || || || | Sbjct 141318 AATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTCTCGAAGTCGAAGCCTC 141259 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| ||| ||||||| || || ||||||||||| |||||||| ||||| || Sbjct 141258 GGATACGATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCA 141199 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 |||| | | || || || |||| Sbjct 141198 GCAGAGATTGATCTTCGCCGGTA 141176 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || || || || ||||||||||| ||||| || || | | Sbjct 141916 ATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACTATTACGCTTGAAGTCGAAGCTTCT 141857 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || || ||||| ||||||||||||||||| ||||| ||| Sbjct 141856 GACACTATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 141797 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || || || || |||| Sbjct 141796 CAGCGACTGATCTTCGCAGGTA 141775 >seq8716 Length=186993 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463 ||||||||||||| || ||||| ||||| || || ||||| || || ||||||||| | Sbjct 74657 TAATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACTATCACCCTGGAGGTTGAGGCCT 74598 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| ||| | ||| ||||||| || |||||||| ||||| ||||| || || || | Sbjct 74597 CCGATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATCCCGCCTGATC 74538 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAA 27548 ||||||| || || || || ||||| Sbjct 74537 AGCAGCGACTTATCTTCGCAGGTAA 74513 >seq8131 Length=46037 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27404 TAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAG 27463 ||||||||||||| || ||||| ||||| || || || || || || ||||||||| | Sbjct 31728 TAATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACCATCACCCTCGAGGTTGAGGCCT 31669 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 ||||| ||| | ||| ||||||| || |||||||| ||||| |||||||| || || | Sbjct 31668 CTGATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCGCCTGATC 31609 Query 27524 AGCAGCGTCTAATTTTTGCTGGT 27546 ||||||| || || || || ||| Sbjct 31608 AGCAGCGACTTATCTTCGCAGGT 31586 >seq8275 Length=204344 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| | || || ||||| || || || || || ||| | Sbjct 59577 AATGCAAATCTTTGTAAAGACATTGACTGGAAAGACGATCACCCTGGAAGTCGAGGCCTC 59636 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| ||||||| || ||||| || ||||| || ||||| |||||||| Sbjct 59637 GGACACAATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAAGGCATTCCACCAGACCA 59696 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| || || ||||| ||| || Sbjct 59697 GCAGCGACTCATATTTGCCGGTCAG 59721 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || || || || || ||||||||| | || || ||| || Sbjct 61051 ATGCAGATCTTCGTGAAAACTCTAACTGGAAAAACTATTACTTTGGAAGTGGAGGCATCC 61110 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| |||| ||||| ||||||||||| || |||||||| || || || Sbjct 61111 GATACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAA 61170 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| || || ||||| ||| Sbjct 61171 CAGCGACTCATCTTTGCCGGT 61191 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| | ||||| ||||| || ||| | || || ||| | Sbjct 60443 AATGCAAATTTTCGTGAAGACATTGACCGGGAAGACAATCACTTTGGAAGTAGAGGCTTC 60502 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || ||||||| || || || |||||||| ||||| || |||||||| Sbjct 60503 TGACACCATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCA 60562 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||| | || |||||||| ||||| Sbjct 60563 GCAAAGGCTCATTTTTGCAGGTAA 60586 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || || || || |||||||| | || || || | Sbjct 60741 ATGCAAATCTTCGTGAAAACTCTGACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCG 60800 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | || || || ||||||||||| || ||||| || ||||| ||| Sbjct 60801 GACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 60860 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 ||||| || || ||||| ||| Sbjct 60861 CAGCGGCTCATCTTTGCCGGT 60881 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || |||||||| ||||||| ||| || || | || || ||| |||| |||||||| ||| Sbjct 60354 GGAAAGCAACTGGAGGATGGTCGCACACTTTCGGATTACAATATCCAGAAGGAATCTACT 60413 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||| || || ||||||||||| || ||| Sbjct 60414 CTTCACCTGGTGTTGCGTCTTCGAGGAGGA 60443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570218330514800