Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq8275 102 7e-17 seq8587 100 2e-16 seq8832 95.1 1e-14 >seq8275 Length=204344 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||||| || || || |||||||| | |||||||| | || Sbjct 61050 CATGCAGATCTTCGTGAAAACTCTAACTGGAAAAACTATTACTTTGGAAGTGGAGGCATC 61109 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || ||| || ||||| ||||||||||| || ||||| ||||| Sbjct 61110 CGATACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCA 61169 Query 27107 ACAGCG 27112 |||||| Sbjct 61170 ACAGCG 61175 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||||||||| || || ||||||| | ||||||||| | || Sbjct 60740 CATGCAAATCTTCGTGAAAACTCTGACTGGAAAAACTATTACATTGGAAGTGGAAGCTTC 60799 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | |||||| || ||||| ||||||||||| || || || ||||| Sbjct 60800 GGACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCA 60859 Query 27107 ACAGCG 27112 ||||| Sbjct 60860 GCAGCG 60865 >seq8587 Length=192155 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||||||||| || ||| ||||||| |||||||| ||| | || Sbjct 141916 ATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACTATTACGCTTGAAGTCGAAGCTTCT 141857 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || ||||||||||| || || || || || ||||| Sbjct 141856 GACACTATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 141797 Query 27108 CAGCG 27112 ||||| Sbjct 141796 CAGCG 141792 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| || || ||| |||||||||||||||| ||| | || Sbjct 141609 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACTATTACTCTTGAAGTCGAAGCCTCA 141550 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || ||||||||||| || || || ||||| Sbjct 141549 GATACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCCCCAGATCAG 141490 Query 27108 CAGCGTTTAAT 27118 || || || || Sbjct 141489 CAACGATTGAT 141479 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || ||| | || ||||| ||||| || | ||| Sbjct 140131 ATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTCTCGAAGTTGAGGCTTCC 140072 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || |||||||||||||| || || ||||| Sbjct 140071 GACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCAG 140012 Query 27108 CAGCGTTTAATATACGCCGGCAA 27130 |||||||| || | ||| || || Sbjct 140011 CAGCGTTTGATCTTCGCTGGTAA 139989 >seq8832 Length=33236 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||||||||| || ||| ||||||| |||||||| ||| | || Sbjct 24617 ATGCAGATTTTCGTCAAAACTCTGACAGGAAAGACTATTACACTTGAAGTCGAAGCTTCT 24558 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || ||||||||||| || || || || || ||||| Sbjct 24557 GACACCATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAG 24498 Query 27108 CAGCG 27112 || || Sbjct 24497 CAACG 24493 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || |||||| | || || || ||||| || | ||| Sbjct 22828 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTCC 22769 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || || |||||||||||||| || |||||||| Sbjct 22768 GATACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGATCAG 22709 Query 27108 CAGCGTTTAATATACGCCGG 27127 |||||||| || | ||| || Sbjct 22708 CAGCGTTTGATCTTCGCTGG 22689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434848187860800