Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8275 86.0 4e-12 seq8587 84.2 1e-11 >seq8275 Length=204344 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||| || || |||||||| || || | ||||| || | || Sbjct 60741 ATGCAAATCTTCGTGAAAACTCTGACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCG 60800 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || ||| ||||||||||| | ||||||||||| Sbjct 60801 GACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 60860 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || |||||||| Sbjct 60861 CAGCGGCTCATCTTTGCCGG 60880 >seq8587 Length=192155 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || ||||| || ||||| || ||||||||||||||||| | | Sbjct 140132 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTCTCGAAGTTGAGGCTTC 140073 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | || || || ||||||||||| | || |||||||| Sbjct 140072 CGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCA 140013 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 |||||||| || || || || || Sbjct 140012 GCAGCGTTTGATCTTCGCTGGTAA 139989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337956396760820