Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq8275 86.0 4e-12
seq8587 84.2 1e-11
>seq8275
Length=204344
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| ||||| || || |||||||| || || | ||||| || | ||
Sbjct 60741 ATGCAAATCTTCGTGAAAACTCTGACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCG 60800
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | ||| || ||| ||||||||||| | |||||||||||
Sbjct 60801 GACACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAG 60860
Query 23731 CAGCGTTTAATATTTGCCGG 23750
||||| | || ||||||||
Sbjct 60861 CAGCGGCTCATCTTTGCCGG 60880
>seq8587
Length=192155
Score = 84.2 bits (92), Expect = 1e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || ||||| || ||||| || ||||||||||||||||| | |
Sbjct 140132 AATGCAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTCTCGAAGTTGAGGCTTC 140073
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||||| | || || || ||||||||||| | || ||||||||
Sbjct 140072 CGACACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCA 140013
Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753
|||||||| || || || || ||
Sbjct 140012 GCAGCGTTTGATCTTCGCTGGTAA 139989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337956396760820
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |