Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq899 118 1e-21 seq7056 107 3e-18 >seq899 Length=82215 Score = 118 bits (130), Expect = 1e-21 Identities = 194/280 (69%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 |||| | ||| |||| |||||| ||||| || || ||||| | |||| ||||| |||| Sbjct 23009 ACTCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTAT 22950 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216 |||| || || || | || | || ||||| || || || | | ||| ||||| | | Sbjct 22949 TACCGCCTTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGC 22890 Query 78217 CGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGG 78276 | |||||||| ||||||||||| | ||| | |||| |||| | ||||| | | Sbjct 22889 CATTAGATGTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGT 22830 Query 78277 ATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336 | |||||||| || || ||||||| || || || || | ||||| || ||||||| Sbjct 22829 TCAGACCTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGA 22770 Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACA 78376 | || | || || || |||| | ||||| ||||| Sbjct 22769 TGCCAGCAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730 Score = 96.9 bits (106), Expect = 5e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 77111 ATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGT 77170 ||||||||| || ||||| || || ||||| | ||||| ||| |||| ||||| ||| Sbjct 24567 ATGAGGATTGACAATTTGGAAATCACCAGAAAGAACTCTTCGACTGTAGATATTTGAGGT 24508 Query 77171 ATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGG 77230 || || || | || || ||||| || | ||| ||||| || || || ||||||||||| Sbjct 24507 GTACGGCTCAATGGACTCGTTGTTGCCAAGAATCTGAGCTGTTGACGCCGTTGGCATAGG 24448 Query 77231 TGCCACCAATAAACTATTTCTGAGACCATGT 77261 || | ||| ||||| || | | ||||||| Sbjct 24447 GGCAAGCAACAAACTGTTGCGAACACCATGT 24417 >seq7056 Length=51435 Score = 107 bits (118), Expect = 3e-18 Identities = 199/292 (68%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 78097 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTAT 78156 |||| | ||| |||| |||||||||||| || || ||||| | |||| ||||| |||| Sbjct 22462 ACTCGAAAATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTAT 22521 Query 78157 TACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 78216 |||| || || || | ||| | || ||||| || || |||| | ||| ||||| | | Sbjct 22522 TACCGCCTTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGC 22581 Query 78217 CGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGG 78276 | || ||||| ||||||||||| | ||| |||| | || | ||||| | | Sbjct 22582 CATTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGT 22641 Query 78277 ATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGA 78336 | |||||||| || || |||| || || || || || | ||||| || ||||| | Sbjct 22642 TCAGACCTATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAA 22701 Query 78337 TACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTG 78388 | || | || || || |||| | || || ||||| ||||| ||| Sbjct 22702 TGCCAGCAATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTG 22753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694556654405600