Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq899 131 2e-25 seq7056 122 1e-22 >seq899 Length=82215 Score = 131 bits (144), Expect = 2e-25 Identities = 197/280 (70%), Gaps = 0/280 (0%) Strand=Plus/Minus Query 76692 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTAT 76751 |||| | ||| |||| |||||| ||||| || || || || | | |||||||| |||| Sbjct 23009 ACTCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCAAATGCTCCCGGTCGCTTAT 22950 Query 76752 TACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGC 76811 |||| || || || | || | |||||||| || || || | | ||| ||||| | || Sbjct 22949 TACCGCCTTGGTCCACGTAACGTGCAGTGTTGTTGTATACACGAAGCATCGGAATCAAGC 22890 Query 76812 CGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAG 76871 | |||||||| ||||||||||| | ||| | |||| ||| | ||||| | Sbjct 22889 CATTAGATGTGCCATTTGTTCCCGCAATCAGAGATCCAGTTGCTCTGATATTGTGCACGT 22830 Query 76872 ATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931 || |||||||| || || | |||||||| || ||||| | ||||| ||||| |||| Sbjct 22829 TCAGACCTATTCCACCGGCACTCTTAGAGATCAGTGCACATTGCTTCAAAGTGTCGTAGA 22770 Query 76932 TGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACA 76971 |||| | || ||| || |||| | ||||| ||||| Sbjct 22769 TGCCAGCAATGGAATCCTCGCTCATTGTCAGAAGGAAACA 22730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 77354 GTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGT 77413 |||| ||| || | ||| || ||||| |||||||| || ||||| |||||||||||||| Sbjct 22004 GTTTTCTTATGCAAATTGGAAACGGCGATTCTAGCGGCAAGAATGGCATAGTCAGGATGC 21945 Query 77414 TGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACT 77473 || || || | || || |||| || ||||| | || | ||| | |||| ||| Sbjct 21944 TGAGTGGTCATCGAAGCCGCAGTTTCAGCAGCTAAGTTGTCCAGTTCCACTGTAGATACT 21885 Query 77474 CCGTTATATAGCCCTTGAATAACTTTCATGGCTA 77507 || || || || || |||||| ||||| |||| Sbjct 21884 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 21851 >seq7056 Length=51435 Score = 122 bits (134), Expect = 1e-22 Identities = 202/292 (69%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 76692 ACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTAT 76751 |||| | ||| |||| |||||||||||| || || || || | | |||||||| |||| Sbjct 22462 ACTCGAAAATGTCAGCATGCCATGGTTCCAGGTAGATTGCGAATGCTCCCGGTCGCTTAT 22521 Query 76752 TACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGC 76811 |||| || || || | ||| | |||||||| || || |||| | ||| ||||| | || Sbjct 22522 TACCGCCTTGGTCCACATAACGTGCAGTGTTGTTGTATACTCGAAGCATCGGAATCAAGC 22581 Query 76812 CGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAG 76871 | || ||||| ||||||||||| | ||| |||| || | ||||| | Sbjct 22582 CATTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTAGCTCTGATATTGTGCACGT 22641 Query 76872 ATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931 || |||||||| || || | || ||||| || ||||| | ||||| ||||| || | Sbjct 22642 TCAGACCTATTCCACCGGCACTCTTGGAGATCAGGGCACATTGCTTCAAAGTGTCGTAAA 22701 Query 76932 TGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTG 76983 |||| | || ||| || |||| | || || ||||| ||||| ||| Sbjct 22702 TGCCAGCAATCGAATCCTCGCTCATTGTTAGGAGGAAACAAGAAGACAGTTG 22753 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||| ||||| ||||| | ||| | ||||| | Sbjct 22870 GTTCCCGCATTGAAAAGCGTGGGAGAAGCATGGGTGAAGTACCGCTCACTCATTAGATCG 22929 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || ||||| || |||| || || ||| ||||||||||| |||||| ||||| | | Sbjct 22930 TACGTTTCGATTGCTGCATCAATGTCCTCGCCATGAATTCCTATAGCGACTCGCATAAGC 22989 Query 77114 ATATGCTGAGGTCGTTCT 77131 ||||||||||| |||||| Sbjct 22990 ATATGCTGAGGACGTTCT 23007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712819305652800