Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27]
12,915 sequences; 319,757,902 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq8716 104 5e-17
seq8587 100 7e-16
seq8275 95.1 3e-14
seq8131 93.3 1e-13
>seq8716
Length=186993
Score = 104 bits (114), Expect = 5e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
||| || ||||||||||| | |||||| || | || |||||||||||| || ||||| ||
Sbjct 74512 TTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTT 74571
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
|| ||| |||| | | | || || ||| || || || || |||||||| |||||
Sbjct 74572 GGCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCGT 74631
Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105
|||||||| ||||||| ||||||
Sbjct 74632 AAGAGTCTTTACGAAGATTTGCATT 74656
>seq8587
Length=192155
Score = 100 bits (110), Expect = 7e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
|| || ||||| || | ||||||||||| | ||||||||||| |||||||| || |
Sbjct 139693 CCAGCAAAGATCAGTCGCTGCTGGTCCGGGGGAATTCCTTCCTTGTCTTGAATCTTGGCT 139752
Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084
|| || |||| | | | || ||| ||| ||||| || || || || ||||| |||||
Sbjct 139753 TTCACGTTCTCGATGGTATCAGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 139812
Query 152085 GTCTTCACGAAGACCTGCAT 152104
||||| ||||||| ||||||
Sbjct 139813 GTCTTGACGAAGATCTGCAT 139832
>seq8275
Length=204344
Score = 95.1 bits (104), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
||||| ||||| |||| |||||| || | || ||||||||| || || ||||| || |
Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 60821
Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084
||||| | || | |||| ||| || ||||| | ||||||||||| || || |||
Sbjct 60820 TTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAGA 60761
Query 152085 GTCTTCACGAAGACCTGCAT 152104
|| |||||||||| |||||
Sbjct 60760 GTTTTCACGAAGATTTGCAT 60741
Score = 84.2 bits (92), Expect = 5e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021
|| || || || || ||||| |||||||| | | |||||||||||| ||||| || ||
Sbjct 60586 TTACCTGCAAAAATGAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGGATCTTC 60527
Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081
|| || |||| | | |||| ||| ||||||||| | ||| || || || || ||
Sbjct 60526 GCCTTCACGTTCTCGATGGTGTCAGAAGCCTCTACTTCCAAAGTGATTGTCTTCCCGGTC 60467
Query 152082 AGAGTCTTCACGAAGACCTGCATT 152105
| ||||||||||| | ||||||
Sbjct 60466 AATGTCTTCACGAAAATTTGCATT 60443
>seq8131
Length=46037
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024
|| ||||||||||| | |||||| || | || ||||||||||| || ||||| ||
Sbjct 31587 CCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTTGGCC 31646
Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084
|| ||| |||| | | | || || ||| || || || || || ||||| ||||| |||
Sbjct 31647 TTCACATTCTCGATGGTATCAGAGGCCTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGA 31706
Query 152085 GTCTTCACGAAGACCTGCATT 152105
||||| ||||||| ||||||
Sbjct 31707 GTCTTTACGAAGATTTGCATT 31727
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153629873305965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |