Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq8587 102 6e-17 seq8832 95.1 9e-15 seq8275 91.5 1e-13 seq8716 87.8 1e-12 >seq8587 Length=192155 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 44194 CTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| || || |||||||||||||||||||||| ||| | ||||| || ||| ||||| Sbjct 139988 CTTACCAGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGGATCTT 140047 Query 44254 CTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGT 44313 ||||| || | |||||||||| | || || || | || || |||||||| || Sbjct 140048 GGCCTTCACATTTTCAATGGTGTCGGAAGCCTCAACTTCGAGAGTGATTGTCTTTCCAGT 140107 Query 44314 GAGGGTCTTCACGAAGATTTGCAT 44337 |||||||| || ||||||||||| Sbjct 140108 AAGGGTCTTGACAAAGATTTGCAT 140131 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||| |||||||| | ||||||||||| || | |||||||| ||| ||||| | Sbjct 141178 CCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 141237 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | || || || | || ||| || || | ||||| |||||||| |||||| Sbjct 141238 TTCACGTTTTCAATCGTATCCGAGGCTTCGACTTCGAGAGTAATGGTCTTTCCAGTGAGG 141297 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| || ||||| ||||| Sbjct 141298 GTCTTGACAAAGATCTGCAT 141317 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || |||||||| || |||||||||| || | ||||| || ||| ||||| | Sbjct 140289 CCTGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 140348 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | |||||||| | | ||| || || | ||||| |||||||| |||||| Sbjct 140349 TTGACGTTTTCAATGGTGTCCGAAGCTTCGACTTCGAGGGTAATTGTCTTTCCAGTGAGG 140408 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||||||||| || ||||| Sbjct 140409 GTCTTCACGAATATCTGCAT 140428 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || ||||||||||| |||||||| |||| || | |||||||| || || || | Sbjct 140587 CCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATTCCTTCCTTATCTTGAATTTTGGCC 140646 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | ||||| |||| | || || || | || || |||||||| || ||| Sbjct 140647 TTTACATTTTCGATGGTATCGGATGCCTCAACTTCGAGAGTGATTGTCTTTCCAGTAAGG 140706 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| |||||||||||||| Sbjct 140707 GTCTTGACGAAGATTTGCAT 140726 >seq8832 Length=33236 Score = 95.1 bits (104), Expect = 9e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || ||||||||||| || |||||||||| || | |||||||| ||| ||||| | Sbjct 24170 CCAGCAAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 24229 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | || || || | || ||| || || | || || |||||||| |||||| Sbjct 24230 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 24289 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| |||||||| ||||| Sbjct 24290 GTCTTAACGAAGATCTGCAT 24309 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || |||||||| | |||||||| |||| || | |||||||| ||| ||||| | Sbjct 22394 CCAGCAAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 22453 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | ||||| |||| | ||| || || | || || |||||||| |||||| Sbjct 22454 TTCACGTTTTCGATGGTATCGGAAGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 22513 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| |||||||| ||||| Sbjct 22514 GTCTTGACGAAGATCTGCAT 22533 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || |||||||||||||||||||| | ||| | ||||| || ||| ||||| | Sbjct 22689 CCAGCGAAGATCAAACGCTGCTGATCGGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCC 22748 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | ||||| |||| | || || || | || || ||||| || |||||| Sbjct 22749 TTCACATTTTCAATGGTATCGGAAGCCTCAACTTCGAGGGTGATGGTCTTGCCAGTGAGG 22808 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| |||||||| ||||| Sbjct 22809 GTCTTGACGAAGATCTGCAT 22828 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || ||||||||||| |||||||| |||| || | |||||||| ||| || || | Sbjct 23287 CCAGCAAAGATCAATCGCTGCTGGTCTGGTGGAATTCCTTCCTTATCCTGAATTTTGGCC 23346 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | ||||| |||| | ||| || || | || ||||||||||| || || Sbjct 23347 TTTACATTTTCGATGGTATCGGATGCTTCAACTTCGAGAGTGATCGTCTTTCCAGTAAGA 23406 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| |||||||||||||| Sbjct 23407 GTCTTGACGAAGATTTGCAT 23426 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || ||||||| ||||||||||||| || | |||||||| ||| ||||| | Sbjct 23876 CCAGCGAAGATCAGTCGCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCC 23935 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 |||| || | || || || | || ||| || || | || || |||||||| |||||| Sbjct 23936 TTCACATTTTCAATAGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTTCCAGTGAGG 23995 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| |||||||| ||||| Sbjct 23996 GTCTTAACGAAGATCTGCAT 24015 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || || |||||||| || |||||||||| || | ||||| || ||| ||||| | Sbjct 22986 CCAGCGAAGATCAATCGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATCTTGGCC 23045 Query 44258 TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 || | || | |||||||| | | ||| || || | || || |||||||| |||||| Sbjct 23046 TTGACGTTTTCGATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTGAGG 23105 Query 44318 GTCTTCACGAAGATTTGCAT 44337 ||||| || ||||| ||||| Sbjct 23106 GTCTTGACAAAGATCTGCAT 23125 >seq8275 Length=204344 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||| | ||||||||||||| || | ||||| || ||| ||||| || Sbjct 60880 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTG-GC 60822 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | ||| | || ||||| | | |||||| |||| ||||| || ||||| || || Sbjct 60821 TTTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTCAG 60762 Query 44317 GGTCTTCACGAAGATTTGCATG 44338 || |||||||||||||||||| Sbjct 60761 AGTTTTCACGAAGATTTGCATG 60740 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 ||||||||||| | || |||||||| | || | |||||||| || ||||| ||| Sbjct 59423 CCGGCAAAGATAAGTCGTTGCTGATCCGGTGGAATTCCTTCCTTATCTTGAATCTT-TGC 59365 Query 44258 -TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 |||| || | || ||||||| || ||| ||||| | || || ||||| || || || Sbjct 59364 TTTCACATTTTCAATAGTGTCGGAGGCTTCAACCTCGAGTGTGATTGTCTTCCCGGTTAG 59305 Query 44317 GGTCTTCACGAAGATTTGCATGATG 44341 ||| ||||| ||||| |||||| || Sbjct 59304 GGTTTTCACAAAGATCTGCATGCTG 59280 >seq8716 Length=186993 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 44195 TTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTC 44254 || || || ||||| | ||||||||||| | || | |||||||| ||| ||||| Sbjct 74513 TTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGGATTCCTTCCTTATCCTGAATCTTG 74572 Query 44255 TGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTG 44314 ||||| | | ||||| |||| || || ||||||| || || || |||||||| Sbjct 74573 GCCTTCACATTCTCGATGGTATCGGAGGCCTCAACCTCCAGGGTGATAGTTTTTCCCGTA 74632 Query 44315 AGGGTCTTCACGAAGATTTGCAT 44337 || ||||| |||||||||||||| Sbjct 74633 AGAGTCTTTACGAAGATTTGCAT 74655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359933736948555