Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20contortus_20[genbank_20GCA_5F000469685.1_202013-08-27] 12,915 sequences; 319,757,902 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8716 134 3e-26 seq8275 131 4e-25 seq8131 131 4e-25 seq8587 116 9e-21 seq8832 113 1e-19 >seq8716 Length=186993 Score = 134 bits (148), Expect = 3e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || |||||||| |||||||| ||||| || ||| || Sbjct 74652 CAAATCTTCGTAAAGACTCTTACGGGAAAAACTATCACCCTGGAGGTTGAGGCCTCCGAT 74593 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||||||||| || ||||||||||| || || ||||| Sbjct 74592 ACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATCCCGCCTGATCAGCAG 74533 Query 178044 CGACTTATCTTCGCCGGAAAAC 178065 |||||||||||||| || |||| Sbjct 74532 CGACTTATCTTCGCAGGTAAAC 74511 >seq8275 Length=204344 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||||||||| || |||||||| || || | || |||||| || ||| Sbjct 60744 CAAATCTTCGTGAAAACTCTGACTGGAAAAACTATTACATTGGAAGTGGAAGCTTCGGAC 60803 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| |||||||||||||||||||||||||| || || ||||| Sbjct 60804 ACAATTGAAAACGTCAAAGCCAAGATTCAGGACAAAGAAGGAATCCCGCCAGATCAGCAG 60863 Query 178044 CGACTTATCTTCGCCGG 178060 || || ||||| ||||| Sbjct 60864 CGGCTCATCTTTGCCGG 60880 Score = 122 bits (134), Expect = 2e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || || || ||||| |||||||| ||| ||| ||| Sbjct 59287 CAGATCTTTGTGAAAACCCTAACCGGGAAGACAATCACACTCGAGGTTGAAGCCTCCGAC 59346 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||||||||| || || |||||||| || ||||| |||||| Sbjct 59347 ACTATTGAAAATGTGAAAGCAAAGATTCAAGATAAGGAAGGAATTCCACCGGATCAGCAA 59406 Query 178044 CGACTTATCTTCGCCGG 178060 ||||||||||| ||||| Sbjct 59407 CGACTTATCTTTGCCGG 59423 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||||||||| || |||||||| || || | || ||||| || || Sbjct 61054 CAGATCTTCGTGAAAACTCTAACTGGAAAAACTATTACTTTGGAAGTGGAGGCATCCGAT 61113 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| ||||||||||||||||||||||| || || || || || Sbjct 61114 ACGATCGAAAATGTGAAAGCTAAGATTCAGGACAAAGAAGGAATTCCACCTGATCAACAG 61173 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| ||||| Sbjct 61174 CGACTCATCTTTGCCGG 61190 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || | || || || || ||||| | || || || || ||| Sbjct 60447 CAAATTTTCGTGAAGACATTGACCGGGAAGACAATCACTTTGGAAGTAGAGGCTTCTGAC 60506 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| || ||||| ||||||||||| || ||||||||| Sbjct 60507 ACCATCGAGAACGTGAAGGCGAAGATCCAAGACAAGGAAGGAATCCCACCAGACCAGCAA 60566 Query 178044 CGACTTATCTTCGCCGGAAA 178063 | || || || || || || Sbjct 60567 AGGCTCATTTTTGCAGGTAA 60586 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || | || ||||| ||||||||||| || || || ||| ||| Sbjct 59581 CAAATCTTTGTAAAGACATTGACTGGAAAGACGATCACCCTGGAAGTCGAGGCCTCGGAC 59640 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||| || || ||||| || || || |||||||| Sbjct 59641 ACAATTGAGAATGTGAAGGCCAAGATTCAAGATAAGGAAGGCATTCCACCAGACCAGCAG 59700 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| || || ||||| Sbjct 59701 CGACTCATATTTGCCGG 59717 >seq8131 Length=46037 Score = 131 bits (144), Expect = 4e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||||| || |||||||| |||||||||||||| || ||| || Sbjct 31723 CAAATCTTCGTAAAGACTCTTACGGGAAAAACCATCACCCTCGAGGTTGAGGCCTCTGAT 31664 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||||||||| || |||||||| || || || ||||| Sbjct 31663 ACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAAGGAATTCCGCCTGATCAGCAG 31604 Query 178044 CGACTTATCTTCGCCGG 178060 |||||||||||||| || Sbjct 31603 CGACTTATCTTCGCAGG 31587 >seq8587 Length=192155 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||||||||| || || || || Sbjct 139829 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTCTGAT 139770 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| |||||||| ||||| |||||||| || ||||||||||| Sbjct 139769 ACCATCGAGAACGTGAAAGCCAAGATTCAAGACAAGGAAGGAATTCCCCCGGACCAGCAG 139710 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 139709 CGACTGATCTTTGCTGG 139693 Score = 116 bits (128), Expect = 9e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| ||||| || || |||||||| || ||| || ||| Sbjct 140425 CAGATATTCGTGAAGACCCTCACTGGAAAGACAATTACCCTCGAAGTCGAAGCTTCGGAC 140366 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| ||||| ||||||||||| || || || |||||| Sbjct 140365 ACCATTGAAAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGATCAGCAA 140306 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 140305 CGATTGATCTTCGCAGG 140289 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || ||||| || || ||||| || || ||| || || Sbjct 141018 CAGATCTTCGTCAAGACCCTTACTGGAAAGACAATTACCCTTGAAGTCGAAGCTTCGGAT 140959 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| || ||||||||||| || ||||| || || |||||||| Sbjct 140958 ACCATTGAGAACGTCAAGGCTAAAATTCAGGACAAGGAGGGAATTCCCCCAGACCAGCAG 140899 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 140898 CGATTGATCTTCGCAGG 140882 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || ||||| || ||||| ||||| || || || ||| Sbjct 140128 CAAATCTTTGTCAAGACCCTTACTGGAAAGACAATCACTCTCGAAGTTGAGGCTTCCGAC 140069 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||||||||||||| || ||||| || ||||| Sbjct 140068 ACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCAGATCAGCAG 140009 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | |||||||| || || Sbjct 140008 CGTTTGATCTTCGCTGGTAA 139989 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| ||||| || || || ||||| || ||| ||| || Sbjct 141314 CAGATCTTTGTCAAGACCCTCACTGGAAAGACCATTACTCTCGAAGTCGAAGCCTCGGAT 141255 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| |||||||| |||||||| || || || ||||| Sbjct 141254 ACGATTGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAGCAG 141195 Query 178044 CGACTTATCTTCGCCGG 178060 || | ||||||||||| Sbjct 141194 AGATTGATCTTCGCCGG 141178 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || ||||| || || || || || || ||| |||||| Sbjct 141606 CAGATCTTTGTCAAGACTCTTACTGGAAAGACTATTACTCTTGAAGTCGAAGCCTCAGAT 141547 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| |||||||||||||| || || || || |||||| Sbjct 141546 ACAATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGGATTCCCCCAGATCAGCAA 141487 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | ||||| || || Sbjct 141486 CGATTGATCTTTGCTGG 141470 >seq8832 Length=33236 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || ||||||||||| || ||| || || Sbjct 22530 CAGATCTTCGTCAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCTTCCGAT 22471 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || ||||| |||||||| |||||||| || || |||||||| Sbjct 22470 ACCATCGAAAACGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCAGCAG 22411 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| ||||| || || Sbjct 22410 CGACTCATCTTTGCTGG 22394 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| ||||| || |||||||| || || ||| || ||| Sbjct 23122 CAGATCTTTGTCAAGACCCTCACTGGAAAGACAATCACCCTTGAAGTCGAAGCTTCGGAC 23063 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| ||||| ||||||||||| || || || |||||| Sbjct 23062 ACCATCGAAAACGTCAAGGCCAAGATCCAGGATAAAGAAGGAATTCCCCCAGATCAGCAA 23003 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 23002 CGATTGATCTTCGCTGG 22986 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||||||||| || || || || Sbjct 23719 CAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTCCGAT 23660 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||||||| ||||||||||||||||| || || || || |||||||| Sbjct 23659 ACCATCGAGAACGTCAAGGCCAAGATTCAGGACAAAGAGGGGATTCCCCCAGACCAGCAG 23600 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 23599 CGATTGATCTTCGCAGG 23583 Score = 113 bits (124), Expect = 1e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||||| |||||||| || || || || || || ||| || ||| Sbjct 24614 CAGATTTTCGTCAAAACTCTGACAGGAAAGACTATTACACTTGAAGTCGAAGCTTCTGAC 24555 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| |||||||| ||||| || ||||| || || || |||||| Sbjct 24554 ACCATTGAAAATGTTAAAGCCAAGATTCAAGACAAGGAGGGAATTCCCCCAGATCAGCAA 24495 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| |||||||| || Sbjct 24494 CGACTGATCTTCGCAGG 24478 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || ||||||||||| || ||| ||| || Sbjct 24012 CAGATCTTCGTTAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCGGAT 23953 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| |||||||| |||||||| || || || ||||| Sbjct 23952 ACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAGCAG 23893 Query 178044 CGACTTATCTTCGCCGG 178060 ||||| |||||||| || Sbjct 23892 CGACTGATCTTCGCTGG 23876 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| ||||| || ||||||||||| || ||| ||| || Sbjct 24306 CAGATCTTCGTTAAGACCCTCACTGGAAAGACCATCACCCTCGAAGTCGAAGCCTCGGAT 24247 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| |||||||| |||||||| || || || |||||| Sbjct 24246 ACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAGCAA 24187 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | ||||| || || Sbjct 24186 CGATTGATCTTTGCTGG 24170 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||||||||| || || || || Sbjct 22825 CAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTTGAGGCTTCCGAT 22766 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||||||||||||| || ||||| || ||||| Sbjct 22765 ACCATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCCGATCAGCAG 22706 Query 178044 CGACTTATCTTCGCCGG 178060 || | |||||||| || Sbjct 22705 CGTTTGATCTTCGCTGG 22689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203532014460510