Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3288 89.7 6e-13 seq5978 86.0 7e-12 >seq3288 Length=24717 Score = 89.7 bits (98), Expect = 6e-13 Identities = 188/275 (68%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 ||| |||| |||||||||||||| ||| || | | |||| || || || || || || Sbjct 15808 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTATTACCGCC 15749 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 || || | ||| | || |||||||| || || | | ||| ||||| | |||||||| Sbjct 15748 TTGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGCCATTGGA 15689 Query 54250 TGCACCATTGGTCCCGGAGATATAGC-TTCCACTGGCACGAATATTACTAATTGATAGAC 54308 || ||||| || || | || ||| |||| | || | |||||| | |||| Sbjct 15688 TGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTTGCTCTGATATTATGCACGTTCAGAC 15630 Query 54309 CTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 |||| || || || | || ||||| | ||| ||| |||| || || || || ||||| Sbjct 15629 CTATTCCGCCGGCACTCTTCGAGATCAGTGCACATTGTTTCAATGTGTCGTAAATGCCAG 15570 Query 54369 CTATACTATCATCCATCA-TGTTAAGTAGAAAACA 54402 | || ||| || ||| |||||| || ||||| Sbjct 15569 CAATCGAATCCTCGCTCATTGTTAA-AAGGAAACA 15536 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 54785 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 54844 |||| ||||| | |||||||| || |||||||| ||||||||||||||||| ||||| Sbjct 14811 GTTTTCTTGTGCAAGTTTGATACAGCAATTCTAGCCGCTAGAATGGCATAATCGGGATGC 14752 Query 54845 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTTACT 54904 || || || | || || |||| || | | |||||| || || || | |||| Sbjct 14751 TGAGTGGTCATCGAAGCAGCAGTTTCAGCAGCTAAGTTGTCCAGCTCCACTGTGGATACT 14692 Query 54905 CCATTATATATTCCTTGGATAACCTTCATAGCTA 54938 || || || | ||| ||||||||||| |||| Sbjct 14691 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 14658 >seq5978 Length=11568 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||| | | ||| || ||||| | |||||||||||| || ||||| ||||| ||||| Sbjct 5396 ATCTCTGATATAGGTCTCAATAAGCTTACTATACATTTCAGAGTGAATATTTTCGATGGC 5455 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 |||||||| ||||| || ||| |||||| | || || |||||| | |||| ||||| Sbjct 5456 AATTTGAAAACCGTAAAAGAATCGAGCCTCAGGAACTTGAACTTCTTTGGAAAAGCGTTC 5515 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || |||||||| ||||||||||| ||| | || |||||||| | |||||||||||| Sbjct 5780 ACCTCTTCCACAGTCCAAAATGACGCCACAGCTTTTTTATAGAAGGCCCAGATGTCATGG 5839 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGATT 24727 || | || || ||||| ||||||||||| ||||| Sbjct 5840 TACTTGATCGGGAAAATGACAAATCTATTCGGATT 5874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593536633457040