Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3076 86.0 5e-12 >seq3076 Length=26571 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 || ||| |||| || || |||||||| || || || |||||||||||| ||| || | Sbjct 25452 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 25511 Query 118659 TTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 ||||| | ||| | ||||||| ||| ||||| || | || | || || || || || Sbjct 25512 TTAACATTTTCAATAGTGTCCGAAGCT-TCGACTTCAAGCGTAATAGTCTTTCCTGTTAG 25570 Query 118718 AGTTTTTACAAAAATCTGCAT 118738 |||||| || ||||||||||| Sbjct 25571 AGTTTTGACGAAAATCTGCAT 25591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433698624422716