Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq931 95.1 1e-14 seq14839 91.5 2e-13 seq1301 91.5 2e-13 seq1287 91.5 2e-13 seq5150 87.8 2e-12 seq1134 87.8 2e-12 seq831 87.8 2e-12 seq226 87.8 2e-12 seq11507 86.0 7e-12 seq9212 86.0 7e-12 >seq931 Length=57168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||||||| ||||||||||| Sbjct 32175 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCACGTGACAGGCGCGGATACTCACCAC 32116 Query 60124 TATACTACCGAGGATTG 60140 |||||||||||||| || Sbjct 32115 TATACTACCGAGGACTG 32099 >seq14839 Length=1280 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||||| Sbjct 130 AAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTC 71 Query 60119 ACCACTATACTACCGAGGAT 60138 |||||||||||||||||||| Sbjct 70 ACCACTATACTACCGAGGAT 51 >seq1301 Length=48132 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||| ||||||| |||| |||||| |||||| |||||| | ||||||| || |||||| Sbjct 48101 AAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTC 48042 Query 60119 ACCACTATACTACCGAGGAT 60138 |||||||||||||||||||| Sbjct 48041 ACCACTATACTACCGAGGAT 48022 >seq1287 Length=48433 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||| ||| |||||| |||| |||||| |||||| |||||| | ||||||| || | Sbjct 38369 ATGACAAAAATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGA 38428 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 38429 TACTCACCACTATACTACCGAGGAT 38453 >seq5150 Length=14596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 10660 AAAAATT--CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 10603 Query 60117 TCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||| Sbjct 10602 TCACCACTATACTACCGAGGAT 10581 >seq1134 Length=51594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 190 AAAAATT--CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 133 Query 60117 TCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||| Sbjct 132 TCACCACTATACTACCGAGGAT 111 >seq831 Length=60141 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||| |||| |||| |||||| |||||| |||||| | ||||||| || |||| Sbjct 42318 AAAAATT--CTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 42261 Query 60117 TCACCACTATACTACCGAGGAT 60138 |||||||||||||||||||||| Sbjct 42260 TCACCACTATACTACCGAGGAT 42239 >seq226 Length=97655 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 73053 AAAAACTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 73112 Query 60118 CACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||| Sbjct 73113 CACCACTATACTACCGAGGAT 73133 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 72163 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 72222 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 72223 TATACTACCGAGGA 72236 >seq11507 Length=2039 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| |||||| |||||| |||||| | ||||||| || ||||| Sbjct 1876 AAAAACTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACT 1935 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 1936 CACCACTATACTACCGAGGA 1955 >seq9212 Length=3963 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| |||||| |||||| |||||| | ||||||| || ||||||||||| Sbjct 3893 TTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATACTCACCAC 3834 Query 60124 TATACTACCGAGGAT 60138 ||||||||||||||| Sbjct 3833 TATACTACCGAGGAT 3819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571639457374440