Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3288 131 1e-25 seq530 89.7 5e-13 >seq3288 Length=24717 Score = 131 bits (144), Expect = 1e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || | ||| ||||||||||| || ||||| | || ||||| ||||| | |||||| Sbjct 15813 TCGAAAATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTATTA 15754 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 ||||| || || |||||||| || ||||| |||||||| | |||||||| | | || Sbjct 15753 CCGCCTTGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGCCA 15694 Query 23561 TTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGG 23620 ||||| | ||| | ||||| | ||| || |||||| | || || |||| Sbjct 15693 TTGGATGTGCCATTTGTTCCCGCAATCAGCGATCCAGTTGCTCTGATATTATGCACGTTC 15634 Query 23621 AAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATG 23680 | |||||| || ||| | ||||| |||| || |||||||||| |||||||| ||| Sbjct 15633 AGACCTATTCCGCCGGCACTCTTCGAGATCAGTGCACATTGTTTCAATGTGTCGTAAATG 15574 Query 23681 CC 23682 || Sbjct 15573 CC 15572 >seq530 Length=72016 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| |||||||||||||| || || ||||| |||||| |||| ||||| | || Sbjct 8808 ATGCAAATCTTCGTAAAGACTCTTACGGGAAAAACTATCACCCTCGAGGTTGAGGCCTCT 8749 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || | || ||| |||||||| | ||||| || ||| Sbjct 8748 GATACTATCGAGAATGTAAAGGCCAAGATTCAGGATAAGGAAGGAATTCCGCCTGATCAG 8689 Query 31313 CAGCGTCTAATATTCGCTGGCAAA 31336 ||||| || || ||||| || ||| Sbjct 8688 CAGCGACTTATCTTCGCAGGTAAA 8665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445627527050160