Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26]
24,923 sequences; 259,125,910 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq3288 107 3e-18
seq5978 96.9 5e-15
>seq3288
Length=24717
Score = 107 bits (118), Expect = 3e-18
Identities = 192/275 (70%), Gaps = 4/275 (1%)
Strand=Plus/Minus
Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099
||| |||| |||||||||||||| ||| || || | ||||||| || || || || ||
Sbjct 15808 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTATTACCGCC 15749
Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159
|| || | ||| | || |||||||| || || | | ||| ||||| | ||||||||
Sbjct 15748 TTGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGCCATTGGA 15689
Query 80160 TGTACCATTGGTCCCGGAGATATAGC-TTCCACTGGCACGAATATTACTAATTGATAGAC 80218
||| ||||| || || | || ||| |||| | || | |||||| | ||||
Sbjct 15688 TGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTTGCTCTGATATTATGCACGTTCAGAC 15630
Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278
||||||| || || | || ||||| | ||| ||| |||| || || || || |||||
Sbjct 15629 CTATTCCGCCGGCACTCTTCGAGATCAGTGCACATTGTTTCAATGTGTCGTAAATGCCAG 15570
Query 80279 CTATGCTATCATCAATCA-TGTTAAGTAGAAAACA 80312
| || ||| || ||| |||||| || |||||
Sbjct 15569 CAATCGAATCCTCGCTCATTGTTAA-AAGGAAACA 15536
Score = 84.2 bits (92), Expect = 3e-11
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 80695 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGT 80754
|||| |||||| | |||||||| || ||||| || |||| |||||||||||| |||||
Sbjct 14811 GTTTTCTTGTGCAAGTTTGATACAGCAATTCTAGCCGCTAGAATGGCATAATCGGGATGC 14752
Query 80755 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 80814
|| || || | || || |||| || || | |||||| || || || | ||||
Sbjct 14751 TGAGTGGTCATCGAAGCAGCAGTTTCAGCAGCTAAGTTGTCCAGCTCCACTGTGGATACT 14692
Query 80815 CCATTATATATTCCTTGGATAACCTTCATAGCTA 80848
|| || || | ||| ||||||||||| ||||
Sbjct 14691 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 14658
>seq5978
Length=11568
Score = 96.9 bits (106), Expect = 5e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516
||| |||||||| ||||||||||| ||| | || |||||||| | ||||||||||||
Sbjct 5779 TACCTCTTCCACAGTCCAAAATGACGCCACAGCTTTTTTATAGAAGGCCCAGATGTCATG 5838
Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552
|| | ||| |||||||| ||||||||||| |||||
Sbjct 5839 GTACTTGATCGGGAAAATGACAAATCTATTCGGATT 5874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718045032333720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |