Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3288 107 3e-18 seq5978 96.9 5e-15 >seq3288 Length=24717 Score = 107 bits (118), Expect = 3e-18 Identities = 192/275 (70%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 80040 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCC 80099 ||| |||| |||||||||||||| ||| || || | ||||||| || || || || || Sbjct 15808 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTATTACCGCC 15749 Query 80100 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 80159 || || | ||| | || |||||||| || || | | ||| ||||| | |||||||| Sbjct 15748 TTGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGCCATTGGA 15689 Query 80160 TGTACCATTGGTCCCGGAGATATAGC-TTCCACTGGCACGAATATTACTAATTGATAGAC 80218 ||| ||||| || || | || ||| |||| | || | |||||| | |||| Sbjct 15688 TGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTTGCTCTGATATTATGCACGTTCAGAC 15630 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 ||||||| || || | || ||||| | ||| ||| |||| || || || || ||||| Sbjct 15629 CTATTCCGCCGGCACTCTTCGAGATCAGTGCACATTGTTTCAATGTGTCGTAAATGCCAG 15570 Query 80279 CTATGCTATCATCAATCA-TGTTAAGTAGAAAACA 80312 | || ||| || ||| |||||| || ||||| Sbjct 15569 CAATCGAATCCTCGCTCATTGTTAA-AAGGAAACA 15536 Score = 84.2 bits (92), Expect = 3e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 80695 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGT 80754 |||| |||||| | |||||||| || ||||| || |||| |||||||||||| ||||| Sbjct 14811 GTTTTCTTGTGCAAGTTTGATACAGCAATTCTAGCCGCTAGAATGGCATAATCGGGATGC 14752 Query 80755 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 80814 || || || | || || |||| || || | |||||| || || || | |||| Sbjct 14751 TGAGTGGTCATCGAAGCAGCAGTTTCAGCAGCTAAGTTGTCCAGCTCCACTGTGGATACT 14692 Query 80815 CCATTATATATTCCTTGGATAACCTTCATAGCTA 80848 || || || | ||| ||||||||||| |||| Sbjct 14691 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 14658 >seq5978 Length=11568 Score = 96.9 bits (106), Expect = 5e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATG 50516 ||| |||||||| ||||||||||| ||| | || |||||||| | |||||||||||| Sbjct 5779 TACCTCTTCCACAGTCCAAAATGACGCCACAGCTTTTTTATAGAAGGCCCAGATGTCATG 5838 Query 50517 ATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 || | ||| |||||||| ||||||||||| ||||| Sbjct 5839 GTACTTGATCGGGAAAATGACAAATCTATTCGGATT 5874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718045032333720