Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3288 102 1e-16 >seq3288 Length=24717 Score = 102 bits (112), Expect = 1e-16 Identities = 193/277 (70%), Gaps = 8/277 (3%) Strand=Plus/Minus Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 ||| |||| |||||||||||||| ||| || || | ||||||| || || || || || Sbjct 15808 AATGTCAGCATGCCACGGTTCCAGGTAGATTGCGAACGCTCCCGGGCGCTTATTACCGCC 15749 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 || || | ||| | || |||||||| || || | | ||| ||||| | |||||||| Sbjct 15748 TTGGTCCACGTAACGCGCAGTGTTATTGTACACGCGAAGCATCGGAATCAAGCCATTGGA 15689 Query 72243 TGCACCATTGGTCCCGGAGATATAGC-TTCCACTGGCACGAATAT--TGCTAATTGATAG 72299 || ||||| || || | || ||| |||| | || | |||| ||| || || Sbjct 15688 TGTGCCATTTGTTCCCGCAAT-CAGCGATCCAGTTGCTCTGATATTATGCACGTT--CAG 15632 Query 72300 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 72359 ||||||||| || || | || ||||| | ||| ||| |||| || || || || ||||| Sbjct 15631 ACCTATTCCGCCGGCACTCTTCGAGATCAGTGCACATTGTTTCAATGTGTCGTAAATGCC 15572 Query 72360 CTCTATACTATCATCCATCA-TGTTAAGTAGAAAACA 72395 | || ||| || ||| |||||| || ||||| Sbjct 15571 AGCAATCGAATCCTCGCTCATTGTTAA-AAGGAAACA 15536 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 72778 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGT 72837 |||| |||||| | |||||||| || ||||| || ||||||||||||||||| ||||| Sbjct 14811 GTTTTCTTGTGCAAGTTTGATACAGCAATTCTAGCCGCTAGAATGGCATAATCGGGATGC 14752 Query 72838 TGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 72897 || || || | || || |||| || || | |||||| || || || | |||| Sbjct 14751 TGAGTGGTCATCGAAGCAGCAGTTTCAGCAGCTAAGTTGTCCAGCTCCACTGTGGATACT 14692 Query 72898 CCATTATATATTCCTTGGATAACCTTCATAGCTA 72931 || || || | ||| ||||||||||| |||| Sbjct 14691 CCTTTGTAGAGTCCAGCAATAACCTTCATCGCTA 14658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670930114971480