Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2750 122 2e-22 seq3076 111 4e-19 seq530 104 5e-17 >seq2750 Length=29324 Score = 122 bits (134), Expect = 2e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || || | |||||||||||| || ||||||||||| ||||||||||| ||| Sbjct 8422 CCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 8481 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || ||| | || || || || |||||||| || ||||| || Sbjct 8482 TTCACATTTTCGATCGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAGA 8541 Query 104540 GTTTTTACAAATATCTGCAT 104559 |||||||| || |||||||| Sbjct 8542 GTTTTTACGAAGATCTGCAT 8561 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || |||| ||| ||||| || || ||||||||||| ||||||||||| ||| Sbjct 8729 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 8788 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | || || || ||| || || | ||||||||| || |||||||| Sbjct 8789 TTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTAAGA 8848 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| Sbjct 8849 GTTTTCACGAAGATTTGCAT 8868 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || || | || ||||| || || |||||||| ||||| |||||||||||| Sbjct 10162 CCGGCAAAGATAAGTCGTTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTTGCT 10221 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || ||| | || ||||| ||||| || ||||| || || || Sbjct 10222 TTCACATTTTCAATAGTGTCGGAGGCCTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 10281 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| ||||| |||||||| Sbjct 10282 GTTTTCACAAAGATCTGCAT 10301 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || ||||| || || | ||| |||||||| || |||||||||||||| || ||||| || Sbjct 9376 CCTGCAAAGATAAGTCGCTGCTGATCAGGTGGAATTCCTTCTTTATCTTGTATCTTGGCC 9435 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| | || ||||| | |||||| ||||| || || | Sbjct 9436 TTGACATTTTCGATTGTATCAGATGCCTCAACCTCCAATGTAATCGTCTTTCCTGTCAAC 9495 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| ||||||||| Sbjct 9496 GTCTTCACAAAGATCTGCATT 9516 >seq3076 Length=26571 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||| || || | | ||| ||||| || || || |||||||| ||||| ||||| || Sbjct 25145 CCAGCGAAGATCAATCGCTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCC 25204 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | |||||| | ||| || || || ||||||||||| |||||||| Sbjct 25205 TTGACATTTTCAATGGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGA 25264 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| ||||||||| Sbjct 25265 GTCTTGACAAAGATCTGCATT 25285 Score = 107 bits (118), Expect = 4e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| ||||| ||||| || |||||||| ||||||||||| || || |||||||| | ||| Sbjct 23689 CTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTCACATTTTCAATGGT 23748 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 ||| || ||| || || || || || ||||| |||||||| || || ||||| || || Sbjct 23749 ATCAGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCAGTAAGGGTCTTGACAAAGATTTG 23808 Query 104557 CATT 104560 |||| Sbjct 23809 CATT 23812 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || || | ||||| || || || ||||||||||||||||||||||| || Sbjct 24267 CCAGCAAAGATCAGTCGTTGTTGGTCCGGTGGGATTCCTTCTTTATCCTGAATCTTGGCC 24326 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || ||||| | |||||| | || || || || || || ||||| |||||||| Sbjct 24327 TTGACGTTTTCGATGGTATCAGATGCCTCGACTTCGAGGGTGATTGTCTTTCCAGTAAGA 24386 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 24387 GTCTTGACGAAGATTTGCATT 24407 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||| || || ||||||||||||||||||||||| || || || ||||| | |||| Sbjct 23986 TGCTGATCTGGGGGAATTCCTTCTTTATCCTGAATCTTGGCCTTGACGTTTTCGATGGTA 24045 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 ||| | || || || || ||||| ||||| || || || || || || || || ||| Sbjct 24046 TCGGATGCCTCGACTTCCAGGGTAATTGTCTTTCCTGTGAGGGTCTTGACGAAGATTTGC 24105 Query 104558 ATT 104560 ||| Sbjct 24106 ATT 24108 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || || || || || | || ||||| || || ||||| || || || |||||||| ||| Sbjct 25452 CCTGCGAAGATCAGTCGTTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGAATCTTGGCT 25511 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | || || || ||| || || || ||||||||||| || || || Sbjct 25512 TTAACATTTTCAATAGTGTCCGAAGCTTCGACTTCAAGCGTAATAGTCTTTCCTGTTAGA 25571 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| Sbjct 25572 GTTTTGACGAAAATCTGCAT 25591 >seq530 Length=72016 Score = 104 bits (114), Expect = 5e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 ||| || || || || || | ||| |||||||| || |||||||| |||||||||||||| Sbjct 8665 TTTACCTGCGAAGATAAGTCGCTGCTGATCAGGCGGAATTCCTTCCTTATCCTGAATCTT 8724 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || |||||||| || | ||||| | || ||||| || || ||||| || || || Sbjct 8725 GGCCTTTACATTCTCGATAGTATCAGAGGCCTCAACCTCGAGGGTGATAGTTTTTCCCGT 8784 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 ||| || ||||| || || |||||| Sbjct 8785 AAGAGTCTTTACGAAGATTTGCATT 8809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151030728626484