Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Haemonchus_20placei_20[genbank_20GCA_5F000951295.1_202014-09-26] 24,923 sequences; 259,125,910 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3076 98.7 9e-16 seq2750 95.1 1e-14 >seq3076 Length=26571 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| |||| ||||||||||| ||||| ||||||||||| | || || |||||||| Sbjct 25151 AAGATCAATCGCTGCTGATCTGGGGGAATCCCTTCTTTGTCCTGGATCTTGGCCTTGACA 25210 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | || || | | ||||| |||| || || || |||||||||||||| || Sbjct 25211 TTTTCAATGGTATCTGAGGCTTCGACTTCAAGAGTAATAGTCTTTCCAGTAAGAGTCTTG 25270 Query 94994 ACAAAGATCTGCAT 95007 |||||||||||||| Sbjct 25271 ACAAAGATCTGCAT 25284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94865 TTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 || ||| | ||||| || | ||||||||||||||||| ||||||||||| | ||| || Sbjct 23669 TTACCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATGCCTTCTTTGTCCTGAATCTTA 23728 Query 94925 GCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTA 94984 ||||| || | | || |||| || || || | |||||||| ||||||||| Sbjct 23729 GCCTTCACATTTTCAATGGTATCAGAAGCTTCAACTTCGAGGGTGATGGTCTTTCCAGTA 23788 Query 94985 AGAGTTTTCACAAAGATCTGCAT 95007 || || || |||||||| ||||| Sbjct 23789 AGGGTCTTGACAAAGATTTGCAT 23811 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| || | ||||| ||||| ||||| || || ||||| | |||||| ||||||||| Sbjct 24566 AAGATCAAGCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGAATTTTAGCCTTGACG 24625 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||||| | ||||| |||| ||||| || ||||||||||| || || Sbjct 24626 TTCTCAATGGTGTCCGAAGCTTCGACTTCAAGGGTGATTGTCTTTCCAGTAAGGGTCTTA 24685 Query 94994 ACAAAGATCTGCAT 95007 || ||||||||||| Sbjct 24686 ACGAAGATCTGCAT 24699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | || ||| || || || || || |||||||| || | ||| || ||||||| Sbjct 24271 CAAAGATCAGTCGTTGTTGGTCCGGTGGGATTCCTTCTTTATCCTGAATCTTGGCCTTGA 24330 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| || |||| ||||| || | ||||| || |||||||||||||| | Sbjct 24331 CGTTTTCGATGGTATCAGATGCCTCGACTTCGAGGGTGATTGTCTTTCCAGTAAGAGTCT 24390 Query 94992 TCACAAAGATCTGCAT 95007 | || ||||| ||||| Sbjct 24391 TGACGAAGATTTGCAT 24406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94874 AAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACG 94933 ||||| |||| ||||| ||||| ||||| || || ||||| | || || ||||| ||| Sbjct 24860 AAGATCAATCGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACG 24919 Query 94934 GCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTC 94993 | | ||| || | | ||||| || | |||||||| ||||| || || ||||| Sbjct 24920 TTTTCAATAGTATCCGAGGCTTCGACCTCGAGAGTGATGGTCTTTCCTGTGAGGGTTTTG 24979 Query 94994 ACAAAGATCTGCAT 95007 |||||||||||||| Sbjct 24980 ACAAAGATCTGCAT 24993 >seq2750 Length=29324 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| | | ||||||||||| || || ||||||||||| | ||| || || Sbjct 8729 CCGGCAAAGATGAGCCGCTGCTGATCTGGCGGGATTCCTTCTTTGTCCTGAATCTTGGCT 8788 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 |||||| | | ||||| | || || || | || || ||||||||||||||| Sbjct 8789 TTGACGTTTTCAATTGTGTCCGAAGCTTCCACTTCCAATGTAATAGTTTTTCCAGTAAGA 8848 Query 94988 GTTTTCACAAAGATCTGCATGC 95009 |||||||| ||||| ||||||| Sbjct 8849 GTTTTCACGAAGATTTGCATGC 8870 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| | || |||||||||||| || || ||||| || || | ||| ||||| Sbjct 10162 CCGGCAAAGATAAGTCGTTGCTGATCTGGTGGGATTCCTTCCTTATCTTGAATCTTTGCT 10221 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | |||||| | | || || || | ||||| || || || || || Sbjct 10222 TTCACATTTTCAATAGTGTCGGAGGCCTCAACCTCGAGTGTGATTGTCTTCCCGGTTAGG 10281 Query 94988 GTTTTCACAAAGATCTGCATGCT 95010 ||||||||||||||||||||||| Sbjct 10282 GTTTTCACAAAGATCTGCATGCT 10304 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| | || || ||||| || ||||| ||||||||||| | ||| || || Sbjct 8422 CCGGCAAAGATAAGTCGCTGTTGATCAGGTGGAATTCCTTCTTTGTCCTGAATCTTAGCT 8481 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || ||| ||||| | | || || || | || || ||||||||||| ||| Sbjct 8482 TTCACATTTTCGATCGTGTCGGAGGCCTCCACTTCCAGAGTAATAGTTTTTCCAGTTAGA 8541 Query 94988 GTTTTCACAAAGATCTGCATGC 95009 ||||| || ||||||||||||| Sbjct 8542 GTTTTTACGAAGATCTGCATGC 8563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448151540480280